变性梯度凝胶电泳(DGGE)

变性梯度凝胶电泳(DGGE)的相关文献在2003年到2020年内共计118篇,主要集中在微生物学、环境科学基础理论、畜牧、动物医学、狩猎、蚕、蜂 等领域,其中期刊论文115篇、会议论文3篇、专利文献80579篇;相关期刊72种,包括生命科学研究、生态学报、生物技术通报等; 相关会议3种,包括四川省畜牧兽医学会2010年学术年会、第三届中国畜牧科技论坛、第五届微生物生态学术研讨会等;变性梯度凝胶电泳(DGGE)的相关文献由452位作者贡献,包括吴正云、尹大强、尹礼国等。

变性梯度凝胶电泳(DGGE)—发文量

期刊论文>

论文:115 占比:0.14%

会议论文>

论文:3 占比:0.00%

专利文献>

论文:80579 占比:99.85%

总计:80697篇

变性梯度凝胶电泳(DGGE)—发文趋势图

变性梯度凝胶电泳(DGGE)

-研究学者

  • 吴正云
  • 尹大强
  • 尹礼国
  • 张其圣
  • 张文学
  • 杨柳燕
  • 赵兴青
  • 陈功
  • 于振洋
  • 潘迎捷
  • 期刊论文
  • 会议论文
  • 专利文献

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    • 黄纷; 岳正波; 李玉龙; 谭娟; 王进
    • 摘要: 文章分别采用变性梯度凝胶电泳(denaturing gradient gel electrophoresis,DGGE)、克隆文库(clone li-brary,CL)及16S rRNA高通量测序(high-throughput sequencing,HS)技术,分析厌氧-缺氧-好氧(anaerobic-anoxic-oxic,A2/O)反应器稳定运行期间各个反应器内微生物群落结构多样性,评价3种测序技术在具体应用中的特色及其局限性.结果表明:对于厌氧反应器古菌分析,HS比DGGE和CL分别多检测出50.00%、83.00%,而在细菌分析中,HS比DGGE和CL分别多检测出21.42%、50.00%;对于缺氧反应器和好氧反应器中细菌的群落结构分析,3种方法测得的微生物种类差别不大.CL操作简单,适用于样品量少的情况;DGGE能直观地反映微生物群落的变化情况,但1次最多分析32个样品;而在分类水平低时,CL和DGGE会低估样品中微生物物种组成,高估相对丰度.
    • 冯敏; 吴红艳; 王志学; 郭玲玲; 李赞
    • 摘要: 研究确定土壤微生物基因组DNA提取方法、PCR扩增条件、DGGE电泳条件,为进一步研究分析土壤中微生物结构变化规律提供理论依据.土壤微生物基因组DNA提取采用直接法和间接法进行比较;PCR扩增条件调整扩增体系、DGGE电泳条件调整变性剂范围,并对其结果进行比较分析.通过对DGGE电泳相关条件的研究,结果显示,土壤中粗基因组DNA采用直接法提取,然后进行纯化;PCR扩增体系中加入BSA,DGGE电泳系统组成中变性剂浓度范围为35%~55%.确定了土壤微生物基因组DNA提取方法、PCR扩增条件、DGGE电泳条件,为后续的相关研究提供理论依据.
    • 周铁安; 王宁; 刘永红
    • 摘要: 作为生物法处理的主体,污泥是影响水处理效率的核心.本文旨在相同水平下综合考察处理不同废水的厌氧颗粒污泥,在不同运行阶段下污泥性质及其内部微生物的动态变化,以期获得颗粒污泥内部宏观和微观的变化规律,为揭示厌氧颗粒污泥处理实际工业废水中出现的问题及反应器运行调控做理论指导.3种处理废水分别为模拟葡萄糖废水、实际造纸废水和实际印染废水,主要考察的污泥性能指标有比产甲烷活性、污泥机械强度及微生物菌群多样性等.
    • 王蓓; 李淑英; 张翠萍; 卢国理; 周元清
    • 摘要: [目的]结合自然发酵生产泡菜的原理,分析云南传统水果泡菜的细菌群落组成和结构多样性,探索泡菜发酵过程中的微生物机制.[方法]采用PCR-DGGE和构建16S rRNA基因文库的方法,对从玉溪市场购买的萝卜、黄瓜、梨3种泡菜样品中细菌群落结构进行研究.[结果]玉溪地区自然发酵泡菜中的细菌种类比较丰富,由于不同水果泡菜的营养基质和附着在蔬菜表面及内在的细菌群落结构不同,导致细菌种类在不同泡水果中所占的相对丰度有较大差异.乳酸菌属(Lactobacillus sp.)在泡水果中并非优势种群,但丘状乳杆菌(Lactobacillus collinoides)在发酵中发挥着重要的作用.此外,在散称泡菜液中检测出部分致病菌,主要为肠球菌属(Enterococcus sp.)、葡萄球菌属(Staphylococcus sp.)和不动杆菌属(Acinetobacter sp.),推测市场上散称泡菜容易滋生致病菌,可能存在一定安全风险.[结论]PCR-DGGE技术能够高效、精确地检测到水果泡菜的细菌多样性.泡菜微生物的组成是指示泡菜安全性的一个重要指标.%[Purpose] Based on the principle of natural fermentation,this study is to analyze the bacterial composition and diversity of traditional fruit pickle in Yunnan.[Method] Three kinds of different materials of pickles (radish,cucumber and pear) were studied based on the analysis of PCR-DGGE and construction of 16S rRNA gene library.[Results] The bacterial species of Yuxi natural fermentation pickles were rich,Lactobacillus collinoides played an important role in the fruit pickle.And there were large diversity relative abundance of bacterial phylogenetic groups identified in radish,cucumber and pear pickles,due to nutrient medium and bacterial community structure attached to the surface and inner of the three fruit pickles were different.In addition,we detected part of pathogens comprising Enterococcus sp.,Staphylococcus sp.and Acinetobacter sp.in the fermentation broth,which can reasonably inferred that the part of pickles purchased scattered on is easy to breed pathogenic bacteria and may exist the potential security problems.[Conclusior] PCR-DGGE is an effective and accurate technique in analyzing microbial diversity.The composition of microorganisms is an important indication for pickles' safety.
    • 牛凤霞; 吉芳英; 赵艮; 张倩; 沈秋实; 何强; 颜海波
    • 摘要: 为探索不同沉积时间条件下沉积物细菌群落的垂向变化及其在湖泊生态系统物质迁移转化过程中所发挥作用,对重庆市园博园龙景湖的原有河道(OR)和新形成库湾(NB)沉积物进行了分层采样,利用变性梯度凝胶电泳(DGGE)技术并结合环境参数进行冗余分析(RDA).结果表明,OR沉积物的细菌多样性指数(H)和丰度(S)高于NB,垂向上H、S和均匀度(E)都由表层至深层先减小后增大.系统发育分析显示,龙景湖沉积物主要包含了7个门类的细菌,OR表层沉积物以δ-变形菌(Deltaproteobacteria)、拟杆菌(Bacteroidetes)和绿弯菌(Chloroflexi)为主,中层以绿弯菌为主,深层以 δ-变形菌和绿弯菌为主;而NB表层和中层的主要菌种与OR深层一致,其他菌种还有Ignavibacteriae、放线菌(Actinobacteria)、厚壁菌(Firmicutes)和绿菌门(Chlorobi).RDA表明,沉积物中总氮(TN)、总硫(TS)、孔隙水的总有机碳(TOC)浓度以及平均粒径是影响细菌群落结构和分布的主要因子.通过DGGE技术所获得的细菌多与有机质的降解有关.OR的TOC、TN含量高于NB,相应的沉积物中δ-变形菌、拟杆菌、Ignavibacteriae等与有机质降解相关的细菌种类和数量较多.%This study explored the vertical distribution of bacterial communities in sediments under different deposition time and its role in the migration and transformation of substances in lake ecosystem. Stratified sediment samples were collected respectively from Original River (OR) and New-formed Bay (NB) in Longjing Lake. Redundancy analysis (RDA) were conducted based on Denaturing Gradient Gel Electrophoresis (DGGE) technology and environmental parameters. Results showed that Shannon-Wiener indexes (H) and Richness indexes (S) in OR were higher than those in NB and vertical change trend ofH, S and Evenness (E) indexes decreased first and then increased as depth increased. Phylogenetic analysis revealed that Longjing lake mainly included seven phyla of bacteria. Deltaproteobacteria, Bacteroidetes and Chloroflexi dominated in surface layers whereas Chloroflexi dominated in middle layers of OR sediments. Deltaproteobacteria and Chloroflexi were the main phyla in deep layers of both sites. Other phyla included Ignavibacteriae, Actinobacteria, Firmicutes and Chlorobi. RDA showed that the main factors influencing bacterial community composition and distribution were total nitrogen (TN), total sulphur (TS) and the concentrations of total organic carbon (TOC) in pore water, as well as average particle size in sediments. Otherwise, the obtained bacteria were closely related to the degradation of organic matter (OM). That TOC and TN contents in OR were higher than those in NB caused relatively higher bacteria species and abundance of Deltaproteobacteria, Bacteroidetes, and Ignavibacteriae.
    • 冉淦侨; 张红艳; 任平
    • 摘要: In this study,the extraction yield of total isoflavones from Puerariae lotaba increased by 5.7% after pretreated with natural compost fermentation. After that,in order to determine the microorganisms playing a major role in this fermentation,the dynamic changes of the microbes in the process of natural fermentation of P. lotaba powder were analyzed using traditional flat culture method and PCR-DGGE technology respectively. The results showed that the number of bacteria showed an"increase-decrease-increase"trend in the whole fermentation process :increased significantly in the temperature-rising stage,then decreased slightly in the thermophilic stage,and finally rose again in the temperature-cooling stage,but the number of fungi presented a continuous increase trend. Besides,several microorganisms isolated from P. lotaba were initially identified to have positive effects on improving the extraction yield of total isoflavones,and these microbes included :Bacillus licheniformis,Rhizoctonia solani,Bacillus,Bacillus subtilis,non-cultivable bacteria,Penicillium japonicum,Aspergillus niger, Aspergillus,Asparagus,and non-cultivable Aspergillus.%采用自然堆积发酵对葛根进行预处理,处理后葛根总异黄酮的提取量提高了5.7%左右.随后,分别采用传统平板法和PCR-DGGE技术,对发酵过程中不同时期微生物菌群的变化进行分析,从而筛选出发酵中起主要作用的微生物.结果表明,自然发酵过程中的细菌呈升高-降低-再升高的变化趋势:升温期明显增多,高温期有所下降,降温期再次增多;真菌的数量在整个发酵过程中都呈持续升高的趋势.发酵过程中起主要作用的微生物也被初步确定,它们分别是地衣芽孢杆菌、桃色欧文氏菌、芽孢杆菌属、枯草芽孢杆菌、不可培养细菌、爪哇青霉、黑曲霉、溜曲霉、米根霉和不可培养曲霉.
    • 吴宗文; 孙军勇; 吴殿辉; 李晓敏; 谢广发; 陆健
    • 摘要: High performance liquid chromatography (HPLC) was used to analyze the contents of organic acids and its changing trend during Chinese rice wine fermentation.To identify acid-producing bacteria in Chinese rice wine fermentation broth,a method unified the modern molecular biology and the traditional microbiology was used.The analysis on fermentation characteristics was also carried out.The results indicated that lactic acid,acetic acid and citric acid were the major organic acids accounting for more than 55% of the content of total organic acids.The content of organic acids showed a upward trend along with fermentation process,wherein citric acid,oxalic acid,tartaric acid,lactic acid,malic acid,pyruvic acid and acetic acid increased largely,while succinic acid,fumaric acid,α-ketoglutaric acid did not increased significantly.The results from denatured gradient gel electrophoresis (DGGE) showed that it contained Lactobacillus,Saccharopolyspora,Staphylococcus,Bacillus licheniformis,Streptomyces sp.and Uncultured bacterium during fermentation.The acid-producing bacteria identified by comparison on 16S rDNA sequence and fermentation characteristics were Lactobacillus,especially Lactobacillus plantarum,which belonged to heterofermentation lactic acid bacteria.%采用高效液相色谱法(high performance liquid chromatography,HPLC)分析了绍兴黄酒发酵过程中有机酸组成及动态变化情况,运用变性梯度凝胶电泳技术(denatured gradient gel electrophoresis,DGGE)分析了细菌群落结构变化,以纯培养结合分子生物学的方法分离、鉴定了产酸细菌,并对其发酵特性进行了研究.结果表明,乳酸、乙酸和柠檬酸是黄酒发酵过程中产生的主要有机酸,其含量占总有机酸的55%以上.有机酸的含量随发酵的进行呈递增趋势,柠檬酸、草酸、酒石酸、乳酸、苹果酸、丙酮酸和乙酸含量增幅较大(90% ~385%),琥珀酸、富马酸、α-酮戊二酸增幅较小(28% ~34%).DGGE分离及测序结果表明,黄酒发酵过程中主要的细菌有乳酸杆菌(Lactobacillus)、糖多孢菌(Saccharopolyspora)、葡萄球菌(Staphylococcus)、地衣芽孢杆菌(Bacillus lichenifor-mis)、链霉菌(Streptomyces sp.)以及不可培养细菌(Uncultured bacterium)等.经16S rDNA序列分析鉴定及发酵特性研究,产酸细菌主要为乳酸杆菌,其中植物乳杆菌占70%,属于异型发酵乳酸菌.
    • 李新; 焦燕; 代钢; 杨铭德; 温慧洋
    • 摘要: 采用变性梯度凝胶电泳(DGGE)技术对内蒙古河套灌区三种不同盐碱程度土壤(盐土,强度盐化土,轻度盐化土)不同深度(0~20cm 和20~30cm)土壤细菌16S rDNA V3~V6可变区扩增片段进行分析,并对土壤理化性质进行了测定.结果表明:细菌群落多样性随土壤盐碱化程度的加深而减少(轻度盐化土>强度盐化土>盐土),随土壤深度的增加而降低(细菌群落多样性0~20cm 土层大于20~30cm 土层).细菌Shannon-Wiener指数在轻度盐化土中最大为3.36,在强度盐化土和盐土分别为3.05和2.49.不同盐碱程度土壤以细菌相似系数聚类,分为0~20cm层与20~30cm层两大族群,土壤细菌群落Shannon-Wiener指数在0~20cm层中(盐土为3.04,强度盐化土为3.29,轻度盐化土为3.36)均大于在20~30cm层(盐土为2.49,强度盐化土为3.05,轻度盐化土为3.14).相关性分析和典范对应分析表明,土壤w(EC)、pH值、w(SOC)、w(TP)是土壤细菌群落结构多样性的显著影响因素,不同盐碱程度土壤中细菌群落的Shannon-Wiener指数与土壤w(EC)(r=-0.542,P strongly salinized soil> saline soil)and declined with soil depths (0~20cm>20~30cm). Shannon-Wiener index of bacterial community in slight salinized soil was the highest value (3.36), while it was only 3.05 and 2.49 in strongly salinized soil and saline soil. The cluster analysis of DGGE bands showed that the bacterial community structure and diversity formed two distinct clusters 0~20cm and 20~30cm. Shannon-Wiener index of bacterial community in 0~20cm layer (saline soil 3.04, strongly salinized soil 3.29, slight salinized soil 3.36) were higher than 20~30cm layer (saline soil2.49, strongly salinized soil 3.05, slight salinized soil 3.14). Analyses of Pearson correlation and CCA revealed that variations of bacterial community structure were mainly affected by contents ofw(EC), pH,w(SOC),w(TP). The soil bacteria diversification index has a negative correlation with thew(EC)(r=-0.542,P<0.05)、pH(r=-0.526,P<0.05), and bacterial community diversity exhibited very significant positive correlation withw(SOC)(r=0.700,P<0.01) andw(TP)(r=0.805,P<0.01).w(EC) and pH were the the greatest influence in saline-alkaline soils. Twenty bands were excised from the DGGE gel and re-amplified for 16S rDNA sequencing. Based on the sequencing results, eleven bands can be identified as related to Proteobacteria. These results provide evidence that Proteobacteria are the domain bacterial communities in different saline-alkaline soils of Hetao Area of Inner Mongolia. Saline-alkali soils were mostly bacterial strains belonging to tolerant salty.
    • 陈熙; 刘以珍; 李金前; 葛刚; 吴兰; 李永绣
    • 摘要: 选用赣州-安远稀土弃废尾矿及其不同植被修复的堆浸田为研究对象,调查废弃尾矿及6种不同植被修复方案下土壤理化性质的变化,并利用变性凝胶梯度电泳(DGGE)技术,分析土壤微生物群落结构对植被修复的响应.结果表明:与未修复尾矿土壤相比,经不同植被修复后的土壤理化性质均得到明显改良,其中土壤含水量、有机质含量均比未修复尾矿土壤增加2-3倍.微生物群落结构分析表明,植被修复后土壤微生物群落与废弃尾矿土壤微生物群落亲缘度仅为0.21,表明植被修复后,土壤微生物群落结构发生了明显变化,且微生物多样性、均匀度、丰富度与未修复尾矿土壤相比均有了明显的提高.而在不同植被修复方案中,以湿地松和山胡椒为优势群落的两种植被修复方案对土壤改良效果最为明显,这两种修复方案不仅能显著改善土壤的固水性、有机质含量,并且对微生物群落的改善作用也最为显著.典范对应分析表明,废弃尾矿土壤微生物群落结构受土壤pH影响最为显著,而植被修复后土壤微生物群落的环境影响因子则转变为含水量、有机质、有机碳及总磷含量.进一步揭示了微生物在植被修复过程中所起到的重要作用,并为矿山生态重建过程中的土壤改良工作提供了丰富的理论依据.
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