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Teaching the Fundamentals of Biological Data Integration Using Classroom Games

机译:使用课堂游戏教授生物数据整合的基础知识

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摘要

This article aims to introduce the nature of data integration to life scientists. Generally, the subject of data integration is not discussed outside the field of computational science and is not covered in any detail, or even neglected, when teaching/training trainees. End users (hereby defined as wet-lab trainees, clinicians, lab researchers) will mostly interact with bioinformatics resources and tools through web interfaces that mask the user from the data integration processes. However, the lack of formal training or acquaintance with even simple database concepts and terminology often results in a real obstacle to the full comprehension of the resources and tools the end users wish to access. Understanding how data integration works is fundamental to empowering trainees to see the limitations as well as the possibilities when exploring, retrieving, and analysing biological data from databases. Here we introduce a game-based learning activity for training/teaching the topic of data integration that trainers/educators can adopt and adapt for their classroom. In particular we provide an example using DAS (Distributed Annotation Systems) as a method for data integration.
机译:本文旨在向生命科学家介绍数据集成的本质。通常,在教学/培训学员时,不会在计算科学领域之外讨论数据集成的主题,也不会对其进行任何详细介绍甚至是忽略不计。最终用户(在此定义为湿实验室实习生,临床医生,实验室研究人员)将主要通过网络界面与生物信息学资源和工具进行交互,从而使用户免受数据集成过程的影响。但是,缺乏正式的培训或不了解甚至是简单的数据库概念和术语,经常会给真正理解最终用户希望使用的资源和工具造成实际障碍。理解数据集成的工作方式是使受训人员有权了解,探索,检索和分析数据库中的生物数据时的局限性和可能性的基础。在这里,我们介绍了一个基于游戏的学习活动,用于培训/教导数据集成的主题,培训师/教育者可以采用并适应他们的课堂。特别是,我们提供了一个使用DAS(分布式注释系统)作为数据集成方法的示例。

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