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TimeDelay-ARACNE: Reverse engineering of gene networks from time-course data by an information theoretic approach

机译:TimeDelay-ARACNE:通过信息论方法从时程数据中逆转基因网络

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摘要

BackgroundOne of main aims of Molecular Biology is the gain of knowledge about how molecular components interact each other and to understand gene function regulations. Using microarray technology, it is possible to extract measurements of thousands of genes into a single analysis step having a picture of the cell gene expression. Several methods have been developed to infer gene networks from steady-state data, much less literature is produced about time-course data, so the development of algorithms to infer gene networks from time-series measurements is a current challenge into bioinformatics research area. In order to detect dependencies between genes at different time delays, we propose an approach to infer gene regulatory networks from time-series measurements starting from a well known algorithm based on information theory.
机译:背景技术分子生物学的主要目标之一是获得有关分子成分之间如何相互作用以及了解基因功能调控的知识。使用微阵列技术,可以将具有数千个基因的测量结果提取到具有细胞基因表达图片的单个分析步骤中。已经开发了几种从稳态数据推断基因网络的方法,有关时程数据的文献很少,因此开发从时间序列测量推断基因网络的算法是生物信息学研究领域的当前挑战。为了检测不同时间延迟的基因之间的依赖性,我们提出了一种方法,该方法从基于信息理论的众所周知的算法开始,通过时序测量推断基因调控网络。

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