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Inaugural Article: Cyclic peptide formation catalyzed by an antibody ligase

机译:就职文章:抗体连接酶催化的环肽形成

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摘要

Cyclic hexapeptides represent a class of compounds with important, diverse biological activities. We report herein that the antibody 16G3 catalyzes the cyclization of d-Trp-Gly-Pal-Pro-Gly-Phe⋅p-nitrophenyl ester (8a) to give c-(d-Trp-Gly-Pal-Pro-Gly-l-Phe) (11a). The antibody does not, however, catalyze either epimerization or hydrolysis. The resulting rate enhancement of the cyclization by 16G3 (22-fold) was sufficient to form the desired product in greater than 90% yield. In absolute rate terms, the turnover of 16G3 is estimated to be 2 min−1. The background rate of epimerization of 8a was reduced from 10 to 1% and hydrolysis from 50 to 4% in the presence of 16G3. As expected, the catalytic effects of 16G3 were blocked by the addition of an amount of the hapten equal to twice the antibody concentration. We also synthesized three diastereomers of 8a: the d-Trp1-d-Phe6 (8b), l-Trp1-l-Phe6 (8c), and l-Trp1-d-Phe6 (8d) hexapeptides as well as d-Trp′-l-Trp6 (12) and d-Phe′-l-Phe6 (13). As expected, the rate enhancement by 16G3 was greatest for 8a, because the stereochemistry of Trp1 and Phe6 matches that of the corresponding residues on the hapten used to induce the biosynthesis of 16G3. A model of the variable domain of 16G3 was generated from the primary sequence using the antibody structural database to guide the model construction. The resulting model provided support for some previously proposed interpretations of the kinetic data, while providing valuable new insights for others.
机译:环六肽代表一类具有重要,多样的生物活性的化合物。我们在此报告,抗体16G3催化d-Trp-Gly-Pal-Pro-Gly-Phe·对硝基苯酯(8a)的环化反应,生成c-(d-Trp-Gly-Pal-Pro-Gly-1 -Phe)(11a)。但是,该抗体既不催化差向异构或水解。通过16G3(22倍)得到的环化速率的提高足以以大于90%的产率形成所需的产物。以绝对速率计算,估计16G3的周转时间为2分钟 -1 。在16G3存在下,8a差向异构化的背景速率从10%降低到1%,水解从50%降低到4%。如所期望的,通过加入等于抗体浓度两倍的半抗原的量来阻断16G3的催化作用。我们还合成了8a的三种非对映异构体:d-Trp 1 -d-Phe 6 (8b),l-Trp 1 -l- Phe 6 (8c)和l-Trp 1 -d-Phe 6 (8d)六肽以及d-Trp'-l -Trp 6 (12)和d-Phe'-l-Phe 6 (13)。如预期的那样,由于Trp 1 和Phe 6 的立体化学与用于诱导生物合成的半抗原中相应残基的立体化学相匹配,因此16G3的速率增强在8a内最大。 16G3。使用抗体结构数据库从一级序列中生成16G3可变域的模型,以指导模型的构建。结果模型为动力学数据的一些先前提出的解释提供了支持,同时为其他模型提供了有价值的新见解。

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