Disclosed are a navigation control system of an unmanned air vehicle based on a TMO model, and a control method thereof. According to embodiments of the present invention, a more stable and reliable system is able to be constructed since a plurality of TMO models are constructed and operated as an individual partition. In addition, by using control information calculated by the other TMO model for controlling an air vehicle if an error occurs in one TMO model, the present invention enables to control the unmanned air vehicle as well as being widely applied to a field requiring a real-time control.
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