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Optimisation of machine learning methods for cancer detection using vibrational spectroscopy

机译:振动光谱法检测癌症的机器学习方法的优化

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摘要

Early cancer detection drastically improves the chances of cure and therefore methodsare required, which allow early detection and screening in a fast, reliable andinexpensive manner. A prospective method, featuring all these characteristics, isvibrational spectroscopy. In order to take the next step towards the development ofthis technology into a clinical diagnostic tool, classification and imaging methods foran automated diagnosis based on spectral data are required.For this study, Raman spectra, derived from axillary lymph node tissue from breastcancer patients, were used to develop a diagnostic model. For this purpose differentclassification methods were investigated. A support vector machine (SVM) proved tobe the best choice of classification method since it classified 100% of the unseen testset correctly. The resulting diagnostic models were thoroughly tested for theirrobustness to the spectral corruptions that would be expected to occur during routineclinical analysis. It showed that sufficient robustness is provided for a futurediagnostic routine application.SVMs demonstrated to be a powerful classifier for Raman data and due to that theywere also investigated for infrared spectroscopic data. Since it was found that a singleSVM was not capable of reliably predicting breast cancer pathology based on tissuecalcifications measured by infrared micro-spectroscopy a SVM ensemble system wasimplemented. The resulting multi-class SVM ensemble predicted the pathology of theunseen test set with an accuracy of 88.9%, in comparison a single SVM assessed withthe same unseen test set achieved 66.7% accuracy. In addition, the ensemble systemwas extended for analysing complete infrared maps obtained from breast tissuespecimens. The resulting imaging method successfully detected and stagedcalcification in infrared maps. Furthermore, this imaging approach revealed newinsights into the calcification process in malignant development, which was notpreviously well understood.
机译:早期癌症检测极大地提高了治愈的机会,因此需要一些方法,这些方法可以快速,可靠且廉价地进行早期检测和筛查。具有所有这些特征的前瞻性方法是振动光谱法。为了将这项技术发展为临床诊断工具,需要基于光谱数据的自动诊断的分类和成像方法。本研究使用了乳腺癌患者腋窝淋巴结组织衍生的拉曼光谱。用于开发诊断模型。为此,研究了不同的分类方法。支持向量机(SVM)被证明是分类方法的最佳选择,因为它可以正确分类100%看不见的测试集。对生成的诊断模型进行了彻底的测试,以验证其对常规临床分析期间可能发生的频谱破坏的稳健性。这表明为未来的诊断常规应用提供了足够的鲁棒性。SVM被证明是拉曼数据的强大分类器,并且由于它们也已用于红外光谱数据的研究。由于已发现singleSVM不能基于通过红外显微光谱法测量的组织钙化可靠地预测乳腺癌病理,因此实施了SVM集成系统。所得的多类SVM集成预测了看不见的测试集的病理,准确度为88.9%,相比之下,使用相同看不见的测试集评估的单个SVM达到了66.7%的准确度。另外,集成系统被扩展以分析从乳房组织标本获得的完整的红外图。所得的成像方法在红外图中成功地检测到并进行了钙化。此外,这种影像学方法揭示了对恶性发展中钙化过程的新见解,这在以前还不是很清楚。

著录项

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    Sattlecker Martine;

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  • 年度 2011
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  • 原文格式 PDF
  • 正文语种 {"code":"en","name":"English","id":9}
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