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Proper balance of solvent-solute and solute-solute interactions in the treatment of the diffusion of glucose using the Drude polarizable force field

机译:溶剂溶质和溶质溶质相互作用的适当平衡使用磨牙极化力场处理葡萄糖的扩散

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Motivated by underestimation of the diffusion constant of glucose in aqueous solution at high glucose concentrations we performed additional optimization of the Drude polarizable hexopyranose monosaccharide force field. This indicated aggregation of the glucose at higher concentrations, which is a concern for studies of complex glycan systems such as the HIV Envelope where high effective concentrations of sugars are present. High-level quantum mechanical calculations were undertaken on water monohydrate-glucose interactions, on water cluster-glucose interactions and on glucose-glucose dimers in stacked (parallel) and perpendicular orientations. Optimization of the nonbond and dihedral parameters targeting these data yielded a revised model that showed improved agreement with experimental aqueous diffusion data. However, limitations in the diffusion constants were still present. These were due to the SWM4-NDP inherently overestimating the diffusion constant of water, a problem that was validated by calculation of the aqueous diffusion constants using the SWM6-NDP water model. In addition, results show the water diffusion constant to be significantly overestimated at high glucose concentrations though the glucose diffusion is in satisfactory agreement with experiment. These results indicate the subtle balance of water-sugar, water-water and sugar-sugar interactions that needs to be properly modeled to account for the full range of aqueous behavior of sugars in aqueous solution. (c) 2018 Elsevier Ltd. All rights reserved.
机译:通过在高葡萄糖浓度下低估葡萄糖在水溶液中的扩散常数的激励,我们对磨牙溶解的六嘧啶单糖磁场进行了额外的优化。这表明葡萄糖在较高浓度下聚集,这是研究复合甘油系统,例如存在高有效浓度的糖的HIV封装的研究。在水簇葡萄糖相互作用和堆叠(平行)和垂直取向的水簇葡萄糖相互作用上进行高水位量子力学计算。靶向这些数据的非官方和二面参数的优化产生了一个修订的模型,显示了与实验性水性扩散数据的改进的协议。然而,仍然存在扩散常数的局限性。这些是由于SWM4-NDP固有地高估水的扩散常数,通过使用SWM6-NDP水模型计算水性扩散常数来验证的问题。此外,结果表明,虽然葡萄糖扩散与实验令人满意的协议,但是在高葡萄糖浓度下显着高估的水扩散常数显着高估。这些结果表明了需要适当建模的水 - 糖,水 - 水和糖 - 糖相互作用的微妙平衡,以考虑含水溶液中糖的全系列水性行为。 (c)2018年elestvier有限公司保留所有权利。

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