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Proper Balance of Solvent-Solute and Solute-Solute Interactions in the Treatment of the Diffusion of Glucose using the Drude Polarizable Force Field

机译:使用Drude极化力场在葡萄糖扩散治疗中溶剂-溶质和溶质-溶质相互作用的适当平衡

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摘要

Motivated by underestimation of the diffusion constant of glucose in aqueous solution at high glucose concentrations we performed additional optimization of the Drude polarizable hexopyranose monosaccharide force field. This indicated aggregation of the glucose at higher concentrations, which is a concern for studies of complex glycan systems such as the HIV Envelope where high effective concentrations of sugars are present. High-level quantum mechanical calculations were undertaken on water monohydrate-glucose interactions, on water cluster-glucose interactions and on glucose-glucose dimers in stacked (parallel) and perpendicular orientations. Optimization of the nonbond and dihedral parameters targeting these data yielded a revised model that showed improved agreement with experimental aqueous diffusion data. However, limitations in the diffusion constants were still present. These were due to the SWM4-NDP inherently overestimating the diffusion constant of water, a problem that was validated by calculation of the aqueous diffusion constants using the SWM6-NDP water model. In addition, results show the water diffusion constant to be significantly overestimated at high glucose concentrations though the glucose diffusion is in satisfactory agreement with experiment. These results indicate the subtle balance of water-sugar, water-water and sugar-sugar interactions that needs to be properly modeled to account for the full range of aqueous behavior of sugars in aqueous solution.
机译:由于低估了高葡萄糖浓度下水溶液中葡萄糖的扩散常数,我们对Drude可极化的六吡喃葡萄糖单糖力场进行了额外的优化。这表明较高浓度下的葡萄糖聚集,这对于复杂的糖类系统(如存在高有效糖分的HIV包膜)的研究是一个问题。对一水-葡萄糖相互作用,水簇-葡萄糖相互作用以及葡萄糖-葡萄糖二聚体在堆叠(平行)和垂直方向上进行了高级量子力学计算。针对这些数据的非键和二面体参数的优化产生了修正的模型,该模型显示出与实验水扩散数据的一致性得到改善。但是,仍然存在扩散常数的限制。这些是由于SWM4-NDP固有地高估了水的扩散常数,这一问题已通过使用SWM6-NDP水模型计算水的扩散常数而得到验证。另外,结果表明,尽管葡萄糖扩散与实验令人满意,但是在高葡萄糖浓度下水扩散常数被大大高估了。这些结果表明水-糖相互作用,水-水相互作用和糖-糖相互作用之间的微妙平衡,需要进行适当的建模以说明糖在水溶液中的所有水性行为。

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