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首页> 外文期刊>The journal of physical chemistry, B. Condensed matter, materials, surfaces, interfaces & biophysical >Dynamics of Hydrophobic Core Phenylalanine Residues Probed by Solid-State Deuteron NMR
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Dynamics of Hydrophobic Core Phenylalanine Residues Probed by Solid-State Deuteron NMR

机译:固态氘核核磁共振探测疏水核心苯丙氨酸残基的动力学

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We conducted a detailed investigation of the dynamics of two phenylalanine side chains in the hydrophobic core of the villin headpiece subdomain protein (HP36) in the hydrated powder state over the 298-80 K temperature range. Our main tools were static deuteron NMR measurements of longitudinal relaxation and line shapes supplemented with computational modeling. The temperature dependence of the relaxation times reveals the presence of two main mechanisms that can be attributed to the ring-flips, dominating at high temperatures, and small-angle fluctuations, dominating at low temperatures. The relaxation is nonexponential at all temperatures with the extent of nonexponentiality increasing from higher to lower temperatures. This behavior suggests a distribution of conformers with unique values of activation energies. The central values of the activation energies for the ring-flipping motions are among the smallest reported for aromatic residues in peptides and proteins and point to a very mobile hydrophobic core. The analysis of the widths of the distributions, in combination with the earlier results on the dynamics of flanking methyl groups (Vugmeyster et al. J. Phys. Chem. B 2013, 117, 6129-6137), suggests that the hydrophobic core undergoes slow concerted fluctuations. There is a pronounced effect of dehydration on the ring-flipping motions, which shifts the distribution toward more rigid conformers. The crossover temperature between the regions of dominance of the small-angle fluctuations and ring-flips shifts from 195 K in the hydrated protein to 278 K in the dry one. This result points to the role of solvent in softening the core and highlights aromatic residues as markers of the protein dynamical transitions.
机译:我们对298-80 K温度范围内水合粉末状态的villin头域亚结构域蛋白(HP36)疏水核心中的两个苯丙氨酸侧链进行了详细的动力学研究。我们的主要工具是对纵向弛豫和线形进行静态氘核NMR测量,并辅以计算模型。弛豫时间对温度的依赖性揭示了存在两种主要机制,这可归因于在高温下占主导地位的环形翻转和在低温下占主导地位的小角度波动。松弛在所有温度下都是非指数的,并且非指数的程度从较高的温度升高到较低的温度。此行为表明具有激活能量唯一值的构象异构体分布。环翻转运动的活化能中心值在肽和蛋白质中的芳香族残基中报道的最小值中,并且指向非常易移动的疏水核。对分布宽度的分析,结合早期关于侧翼甲基动力学的结果(Vugmeyster等人,J。Phys。Chem。B 2013,117,6129-6137)表明,疏水性核的反应较慢一致的波动。脱水对环翻转运动有明显的影响,使分布向更刚性的构象异构体转移。小角度波动和环形翻转的优势区域之间的转换温度从水合蛋白质中的195 K转变为干燥蛋白质中的278K。该结果指出了溶剂在软化核心中的作用,并突出了芳香族残基作为蛋白质动态转变的标志。

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