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Using Bayes formula to estimate rates of rare events in transition path sampling simulations

机译:使用贝叶斯公式估算过渡路径采样模拟中的稀有事件发生率

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Transition path sampling is a method for estimating the rates of rare events in molecular systems based on the gradual transformation of a path distribution containing a small fraction of reactive trajectories into a biased distribution in which these rare trajectories have become frequent. Then, a multistate reweighting scheme is implemented to postprocess data collected from the staged simulations. Herein, we show how Bayes formula allows to directly construct a biased sample containing an enhanced fraction of reactive trajectories and to concomitantly estimate the transition rate from this sample. The approach can remediate the convergence issues encountered in free energy perturbation or umbrella sampling simulations when the transformed distribution insufficiently overlaps with the reference distribution. (C) 2015 AIP Publishing LLC.
机译:过渡路径采样是一种基于分子分布的稀有事件发生率的估算方法,该方法基于将包含一小部分反应性轨迹的路径分布逐渐转换为其中这些罕见轨迹变得频繁的有偏分布的方法。然后,实施多状态重新加权方案以对从分阶段模拟中收集的数据进行后处理。本文中,我们展示了贝叶斯公式如何直接构造包含反应轨迹的分数增加的有偏样本,并由此估计该样本的跃迁速率。当变换后的分布与参考分布不充分重叠时,该方法可以纠正在自由能扰动或伞状采样模拟中遇到的收敛问题。 (C)2015 AIP Publishing LLC。

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