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首页> 外文期刊>BMC Bioinformatics >Mathematical model of hypoxia and tumor signaling interplay reveals the importance of hypoxia and cell-to-cell variability in tumor growth inhibition
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Mathematical model of hypoxia and tumor signaling interplay reveals the importance of hypoxia and cell-to-cell variability in tumor growth inhibition

机译:缺氧和肿瘤信号传导相互作用的数学模型揭示了缺氧和细胞对肿瘤生长抑制中的细胞变异性的重要性

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Human tumor is a complex tissue with multiple heterogeneous hypoxic regions and significant cell-to-cell variability. Due to the complexity of the disease, the explanation of why anticancer therapies fail cannot be attributed to intrinsic or acquired drug resistance alone. Furthermore, there are inconsistent reports of hypoxia-induced kinase activities in different cancer cell-lines, where increase, decreases, or no change has been observed. Thus, we asked, why are there widely contrasting results in kinase activity under hypoxia in different cancer cell-lines and how does hypoxia play a role in anti-cancer drug sensitivity? We took a modeling approach to address these questions by analyzing the model simulation to explain why hypoxia driven signals can have dissimilar impact on tumor growth and alter the efficacy of anti-cancer drugs. Repeated simulations with varying concentrations of biomolecules followed by decision tree analysis reveal that the highly differential effects among heterogeneous subpopulation of tumor cells could be governed by varying concentrations of just a few key biomolecules. These biomolecules include activated serine/threonine-specific protein kinases (pRAF), mitogen-activated protein kinase kinase (pMEK), protein kinase B (pAkt), or phosphoinositide-4,5-bisphosphate 3-kinase (pPI3K). Additionally, the ratio of activated extracellular signal-regulated kinases (pERK) or pAkt to its respective total was a key factor in determining the sensitivity of pERK or pAkt to hypoxia. This work offers a mechanistic insight into how hypoxia can affect the efficacy of anti-cancer drug that targets tumor signaling and provides a framework to identify the types of tumor cells that are either sensitive or resistant to anti-cancer therapy.
机译:人肿瘤是具有多种异质缺氧区域的复杂组织和显着的细胞对细胞变异性。由于疾病的复杂性,解释为什么抗癌疗法失败不能归因于单独的内在或获得的耐药性。此外,在不同癌细胞系中存在缺氧诱导的激酶活性的报道,其中已经增加,降低或没有变化。因此,我们问道,为什么在不同癌细胞系中缺氧下的激酶活性会对对策以及缺氧在抗癌药物敏感性中发挥作用的血糖活性以及我们采取了一种建模方法来解决这些问题,通过分析模型模拟来解释为什么缺氧驱动信号对肿瘤生长产生不同的影响,改变抗癌药物的疗效。重复模拟具有不同浓度的生物分子,然后进行决策树分析表明,肿瘤细胞的异质亚群之间的高差异效应可以通过不同少数关键生物分子的不同浓度来控制。这些生物分子包括活化的丝氨酸/苏氨酸特异性蛋白激酶(PRAF),丝裂原活化蛋白激酶激酶(PMEK),蛋白激酶B(PAKT),或磷酸阳性-4,5-二磷酸3-激酶(PPI3K)。另外,活化的细胞外信号调节激酶(PERK)或PAKT与其各自的总和的比例是确定PRK或PAKT到缺氧的敏感性的关键因素。这项工作提供了机械洞察缺氧如何影响靶向肿瘤信号传导的抗癌药物的疗效,并提供框架,以鉴定敏感或抗癌治疗的肿瘤细胞类型。

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