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Secondary Metabolome and Transcriptome of Streptomyces albus J1074 in Liquid Medium SG2

机译:液体培养基SG2中链霉菌J1074的次级代谢组和转录组

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摘要

Streptomyces albus J1074 is one of the most popular chassis for heterologous expression of actino-bacterial biosynthetic gene clusters (BGCs). Considerable efforts are invested into understanding all the physiological and genetic aspects of secondary metabolism of J1074 in order to maximize the expression of heterologous BGCs. It has to be noted that the J1074 genome itself is home to numerous ( 20) BGCs, whose expression varies widely. Therefore, the identification of the factors limiting the expression of J1074 BGCs might help improve this strain for heterologous expression purposes. As first steps towards this goal, herein we describe the secondary metabolome of J1074 in liquid medium SG2, previously shown by us to support the production of antibacterial and antifungal compounds. We compare the results of metabolomic studies with the transcriptome of J1074 in SG2 after 60 h of growth. Results of our studies are discussed in the context of current knowledge on the J1074 transcriptome and metabolome data.
机译:白色链霉菌J1074是放线表达放线菌细菌生物合成基因簇(BGC)的最流行的底盘之一。为了最大程度地表达异源BGC,J1074二级代谢的所有生理和遗传方面的知识投入了巨大的精力。必须注意的是,J1074基因组本身是众多(> 20)BGC的所在地,其表达差异很大。因此,鉴定限制J1074 BGCs表达的因素可能有助于改善该菌株的异源表达目的。作为朝着这个目标迈出的第一步,我们在这里描述了液体培养基SG2中J1074的次级代谢组,之前我们对它的研究表明,它可以支持抗菌和抗真菌化合物的生产。我们比较了代谢组学研究的结果与生长60 h后SG2中J1074的转录组。我们的研究结果是在有关J1074转录组和代谢组数据的最新知识的背景下讨论的。

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  • 来源
    《Cytology and genetics》 |2019年第1期|1-7|共7页
  • 作者单位

    Ivan Franko Natl Univ Lviv, Dept Genet & Biotechnol, UA-79005 Lvov, Ukraine;

    Ivan Franko Natl Univ Lviv, Dept Genet & Biotechnol, UA-79005 Lvov, Ukraine;

    Ivan Franko Natl Univ Lviv, Dept Genet & Biotechnol, UA-79005 Lvov, Ukraine;

    Bielefeld Univ, Technol Platform Genom, D-33615 Bielefeld, Germany;

    Bielefeld Univ, Technol Platform Genom, D-33615 Bielefeld, Germany;

    Tech Univ Berlin, Inst Chem, D-10623 Berlin, Germany;

    Tech Univ Berlin, Inst Chem, D-10623 Berlin, Germany;

    Ivan Franko Natl Univ Lviv, Dept Genet & Biotechnol, UA-79005 Lvov, Ukraine;

    Ivan Franko Natl Univ Lviv, Dept Genet & Biotechnol, UA-79005 Lvov, Ukraine;

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  • 原文格式 PDF
  • 正文语种 eng
  • 中图分类
  • 关键词

    Streptomyces albus J1074; secondary metabolism; RNA-seq;

    机译:链霉菌J1074;二次代谢;RNA-seq;

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