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Design and performance characterization of electronic structure calculations on massively parallel supercomputers: a case study of GPAW on the Blue Gene/P architecture

机译:大规模并行超级计算机上电子结构计算的设计和性能表征:基于Blue Gene / P架构的GPAW案例研究

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摘要

Density function theory (DFT) is the most widely employed electronic structure method because of itsrnfavorable scaling with system size and accuracy for a broad range of molecular and condensed-phasernsystems. The advent of massively parallel supercomputers has enhanced the scientific community’s abilityrnto study larger system sizes. Ground-state DFT calculations on ~10~3 valence electrons using traditionalrnO(N~3) algorithms can be routinely performed on present-day supercomputers. The performance characteristicsrnof these massively parallel DFT codes on >10~4 computer cores are not well understood. The GPAWrncode was ported an optimized for the Blue Gene/P architecture. We present our algorithmic parallelizationrnstrategy and interpret the results for a number of benchmark test cases.
机译:密度泛函理论(DFT)是最广泛使用的电子结构方法,因为它在系统范围和精确度上对大范围的分子和凝聚相系统具有有利的缩放比例。大规模并行超级计算机的出现增强了科学界研究更大系统尺寸的能力。使用传统的rnO(N〜3)算法对〜10〜3个价电子进行基态DFT计算可在当今的超级计算机上常规执行。在10到4个以上的计算机内核上,这些大规模并行DFT代码的性能特征尚未得到很好的理解。 GPAWrncode已移植为Blue Gene / P体系结构进行了优化。我们提出了算法并行化策略,并解释了许多基准测试用例的结果。

著录项

  • 来源
    《Concurrency, practice and experience》 |2015年第1期|69–93|共1页
  • 作者单位

    Leadership Computing Facility, Argonne National Laboratory, Argonne, IL 60439, USA;

    Center for Individual Nanoparticle Functionality, Department of Physics, Technical University of Denmark, DK-2800 Kgs. Lyngby, Denmark;

    Center for Atomic-scale Materials Design, Department of Physics, Technical University of Denmark, DK-2800 Kgs. Lyngby, Denmark Nano-bio Spectroscopy Group and ETSF Scientific Development Center, Departamento de Física de Materiales, Universidad del País Vasco, CSIC–UPV/EHU–MPC and DIPC, Avenida de Tolosa 72, E-20018 San Sebastián, Spain;

    CSC - IT Center for Science Ltd., P.O. Box 405 FI-02101 Espoo, Finland Department of Applied Physics, School of Science, Aalto University, P.O. Box 11100 FI-00076 AALTO, Finland;

    Performance Research Laboratory, University of Oregon, Eugene, OR, 97403, USA;

    Leadership Computing Facility, Argonne National Laboratory, Argonne, IL 60439, USA;

    Center for Atomic-scale Materials Design, Department of Physics, Technical University of Denmark, DK-2800 Kgs. Lyngby, Denmark;

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  • 原文格式 PDF
  • 正文语种 eng
  • 中图分类
  • 关键词

    GPAW; electronic structure; DFT; blue gene; massive parallelization; high-performance computing;

    机译:GPAW;电子结构DFT;蓝色基因大规模并行化;高性能计算;

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