首页> 美国卫生研究院文献>Journal of Undergraduate Neuroscience Education >Undergraduate Biocuration: Developing Tomorrow’s Researchers While Mining Today’s Data
【2h】

Undergraduate Biocuration: Developing Tomorrow’s Researchers While Mining Today’s Data

机译:本科生生物治疗:在挖掘当今数据的同时培养明天的研究人员

代理获取
本网站仅为用户提供外文OA文献查询和代理获取服务,本网站没有原文。下单后我们将采用程序或人工为您竭诚获取高质量的原文,但由于OA文献来源多样且变更频繁,仍可能出现获取不到、文献不完整或与标题不符等情况,如果获取不到我们将提供退款服务。请知悉。

摘要

Biocuration is a time-intensive process that involves extraction, transcription, and organization of biological or clinical data from disjointed data sets into a user-friendly database. Curated data is subsequently used primarily for text mining or informatics analysis (bioinformatics, neuroinformatics, health informatics, etc.) and secondarily as a researcher resource. Biocuration is traditionally considered a Ph.D. level task, but a massive shortage of curators to consolidate the ever-mounting biomedical “big data” opens the possibility of utilizing biocuration as a means to mine today’s data while teaching students skill sets they can utilize in any career. By developing a biocuration assembly line of simplified and compartmentalized tasks, we have enabled biocuration to be effectively performed by a hierarchy of undergraduate students. We summarize the necessary physical resources, process for establishing a data path, biocuration workflow, and undergraduate hierarchy of curation, technical, information technology (IT), quality control and managerial positions. We detail the undergraduate application and training processes and give detailed job descriptions for each position on the assembly line. We present case studies of neuropathology curation performed entirely by undergraduates, namely the construction of experimental databases of Amyotrophic Lateral Sclerosis (ALS) transgenic mouse models and clinical data from ALS patient records. Our results reveal undergraduate biocuration is scalable for a group of 8–50+ with relatively minimal required resources. Moreover, with average accuracy rates greater than 98.8%, undergraduate biocurators are equivalently accurate to their professional counterparts. Initial training to be completely proficient at the entry-level takes about five weeks with a minimal student time commitment of four hours/week.
机译:生物固化是一个耗时的过程,涉及从不相交的数据集中提取,转录和组织生物学或临床数据到用户友好的数据库中。策展的数据随后主要用于文本挖掘或信息学分析(生物信息学,神经信息学,健康信息学等),其次用作研究人员资源。传统上,生物固化被认为是博士学位。级别的任务,但策展人严重缺乏整合不断增长的生物医学“大数据”的可能性,这使人们有可能利用生物治疗技术来挖掘当今的数据,同时教授学生可以在任何职业中使用的技能。通过开发简化和分隔任务的生物固化生产线,我们使生物固化能够有效地由一群本科生进行。我们总结了必要的物理资源,建立数据路径的过程,生物固化工作流程以及本科层次的策展,技术,信息技术(IT),质量控制和管理职位。我们详细介绍了本科生的申请和培训过程,并提供了装配线上每个职位的详细职位描述。我们介绍了完全由大学生进行的神经病理学治疗的案例研究,即肌萎缩性侧索硬化症(ALS)转基因小鼠模型实验数据库的构建以及来自ALS患者记录的临床数据。我们的结果表明,本科生生物治疗可扩展到8-50岁以上的人群,所需资源相对最少。此外,本科生生物治疗师的平均准确率超过98.8%,与专业同行的精确度相当。要完全精通入门级的初始培训大约需要五个星期,而最少的学生时间承诺为每周四个小时。

著录项

相似文献

  • 外文文献
  • 中文文献
  • 专利
代理获取

客服邮箱:kefu@zhangqiaokeyan.com

京公网安备:11010802029741号 ICP备案号:京ICP备15016152号-6 六维联合信息科技 (北京) 有限公司©版权所有
  • 客服微信

  • 服务号