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The TIGR rice genome annotation resource: annotating the rice genome and creating resources for plant biologists

机译:TIGR水稻基因组注释资源:注释水稻基因组并为植物生物学家创建资源

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摘要

Rice is not only a major food staple for the world's population but it also is a model species for a major group of flowering plants, the monocotyledonous plants. Draft genomic sequence of two subspecies of rice, Oryza sativa spp. japonica and indica ssp. are publicly available. To provide the community with a resource to data-mine the rice genome, we have constructed an annotation resource for rice (). In this resource, we have annotated the rice genome for gene content, identified motifs/domains within the predicted genes, constructed a rice repeat database, identified related sequences in other plant species, and identified syntenic sequences between rice and maize. All of the data is available through web-based interfaces, FTP downloads, and a Distributed Annotation System.
机译:水稻不仅是世界人口的主要粮食主食,而且还是主要开花植物(单子叶植物)的典范品种。水稻两个水稻亚种的基因组序列初稿。粳稻和in稻公开可用。为了为社区提供挖掘水稻基因组数据的资源,我们为水稻()构建了注释资源。在此资源中,我们已为水稻基因组添加了基因含量注释,鉴定了预测基因内的基序/结构域,构建了水稻重复数据库,鉴定了其他植物物种的相关序列以及鉴定了水稻与玉米之间的同义序列。所有数据都可以通过基于Web的界面,FTP下载和分布式注释系统获得。

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