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Parallel genetic algorithms in numerical heat transfer and population biology applications.

机译:数值传热和种群生物学应用中的并行遗传算法。

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摘要

This work consists of two different, yet interrelated applications of genetic algorithms. In the first part of this work, we present a genetic algorithm designed to solve boundary value problems in conduction heat transfer. As the results show, our algorithm shows good convergence and can solve problems with a variety of boundary conditions. This is largely due to the presence of a novel "genetic engineering" local search operator that significantly increases the algorithm's accuracy. However, the performance of this operator deteriorates with increasing problem size, both in terms of accuracy and running time. Thus, in subsequent work, we improve the algorithm in two ways: First, we replace the "genetic engineering" operator with a new and far more powerful "regeneration" operator that improves accuracy even further, while maintaining its effectiveness with increasing problem size. Second, the algorithm is implemented on a parallel computer. Our parallelization strategy is the well-known "master-slave" strategy that involves distributing the fitness evaluation among several processors. The tests conducted indicate that considerable improvement in performance can be achieved for problem sizes of the order of 40,000 unknowns. More encouragingly, parallel speedup and efficiency both increase with increasing problem size, something we find very promising.; In the second major component of this work, the reverse is attempted: Genetic algorithm methodology is used in conjunction with principles of energy conservation to study evolution itself. This is done by developing a micro-analytical modeling procedure that explicitly simulates an evolving biological population at the level of individual genotypes and phenotypes. The population evolves according to the familiar genetic algorithm operators of fitness evaluation, selection, reproduction, and mutation. Our model is differentiated from previous work in this area in that fitness is not calculated on the basis of an arbitrary mathematical function, but on the mathematical formulation of the principle of energy conservation, thereby putting the model on a sound mathematical footing. The model was tested by applying it to two problems of interest: That of transgenic organism release into the wild, and the practice of genetic eugenics. Preliminary results and comparisons with other models indicate the qualitative validity of our model.
机译:这项工作由遗传算法的两个不同但相互关联的应用组成。在这项工作的第一部分中,我们提出了一种遗传算法,旨在解决传导传热中的边值问题。结果表明,该算法具有良好的收敛性,可以解决各种边界条件下的问题。这很大程度上是由于存在一种新颖的“基因工程”本地搜索运算符,该运算符显着提高了算法的准确性。但是,该操作员的性能随问题大小的增加而降低,无论是从准确性还是在运行时间上。因此,在随后的工作中,我们通过两种方式改进算法:首先,我们用新的功能更强大的“再生”运算符替换“遗传工程”运算符,该运算符甚至在提高问题大小的同时保持有效性,从而进一步提高了准确性。其次,该算法在并行计算机上实现。我们的并行化策略是众所周知的“主从”策略,该策略涉及在多个处理器之间分配适应性评估。进行的测试表明,对于40,000个未知量级的问题,可以显着提高性能。更令人鼓舞的是,并行加速和效率都随着问题规模的增加而增加,我们发现这很有希望。在这项工作的第二个主要组成部分中,尝试了相反的工作:遗传算法方法与节能原理一起用于研究进化本身。这是通过开发一种微观分析建模程序来完成的,该程序可以在单个基因型和表型水平上显式模拟不断发展的生物种群。种群根据适应性评估,选择,繁殖和变异的熟悉的遗传算法算子进化。我们的模型与该领域以前的工作有所不同,其适用性不是基于任意数学函数来计算的,而是基于节能原理的数学公式来计算的,因此该模型具有良好的数学基础。通过将模型应用于两个有趣的问题,对模型进行了测试:转基因生物释放到野外的问题以及遗传优生学的实践。初步结果和与其他模型的比较表明了我们模型的质量有效性。

著录项

  • 作者单位

    University of California, Berkeley.;

  • 授予单位 University of California, Berkeley.;
  • 学科 Biology Genetics.; Engineering Mechanical.
  • 学位 Ph.D.
  • 年度 2004
  • 页码 159 p.
  • 总页数 159
  • 原文格式 PDF
  • 正文语种 eng
  • 中图分类 遗传学;机械、仪表工业;
  • 关键词

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