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Routing-Based Synthesis of Digital Microfluidic Biochips

机译:基于路由的数字微流控生物芯片合成

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摘要

Microfluidic biochips are replacing the conventional biochemical analyzers, and are able to integrate on-chip all the basic functions for biochemical analysis. The "digital" microfluidic biochips are manipulating liquids not as a continuous flow, but as discrete droplets on a two-dimensional array of electrodes. Basic microfluidic operations, such as mixing and dilution, are performed on the array, by routing the corresponding droplets on a series of electrodes. So far, researchers have assumed that these operations are executed on rectangular virtual devices, formed by grouping several adjacent electrodes. One drawback is that all electrodes are considered occupied during the operation execution, although the droplet uses only one electrode at a time. Moreover, the operations can actually execute by routing the droplets on any sequence of electrodes on the array. Hence, in this paper, we eliminate the concept of virtual modules and allow the droplets to move on the chip on any route during operation execution. Thus, the synthesis problem is transformed into a routing problem. We propose an approach derived from a Greedy Randomized Adaptive Search Procedure (GRASP) and we show that by considering routing-based synthesis, significant improvements can be obtained in the application completion time.
机译:微流体生物芯片正在取代传统的生化分析仪,并且能够在芯片上集成生化分析的所有基本功能。 “数字”微流体生物芯片不是以连续流的形式来操纵液体,而是以二维电极阵列上的离散液滴的形式来操纵液体。基本的微流体操作(例如混合和稀释)通过在一系列电极上布置相应的液滴,在阵列上执行。到目前为止,研究人员已经假设这些操作是在矩形虚拟设备上执行的,该设备是通过将几个相邻电极分组而形成的。一个缺点是尽管液滴一次只使用一个电极,但在执行操作期间所有电极都被认为是被占用的。此外,实际上可以通过在阵列上的电极的任何序列上对液滴进行布线来执行操作。因此,在本文中,我们消除了虚拟模块的概念,并允许液滴在操作执行期间以任何路线在芯片上移动。因此,综合问题转化为路由问题。我们提出了一种从贪婪随机自适应搜索过程(GRASP)派生的方法,并且我们表明通过考虑基于路由的综合,可以在应用程序完成时间上获得显着的改进。

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