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Application of Machine Learning in Knowledge Discovery for Pharmaceutical Drug-drug Interactions

机译:机器学习在药物-药物相互作用知识发现中的应用

摘要

Artificial neural networks (ANNs) have been developed to predict the clinical significance of drug-drug interactions (DDIs) for a set of 35 phar-maceutical drugs using data compiled from the Web-based resources, Lexi-comp® and Vidal®, with inputs furnished by various drug pharmacokinetic (PK) and/or pharmacodynamic (PD) properties, and/or drug-enzyme interaction data. Success in prediction of DDI significance was found to vary according to the drug properties used as ANN input, and also varied with the DDI dataset used in training. The Lexicomp® dataset is found to give predictions marginal-ly better than those obtained using the Vidal® dataset, with the best prediction of minor DDIs achieved using a multi-layer perceptron (MLP) model trained using enzyme variables alone (F1 82%) and the best prediction of major DDIs achieved using a MLP model trained on PK/PD properties alone (F1 54%). Given a more comprehensive and more consistent dataset of DDI data, we con-clude that machine learning tools could be used to acquire new knowledge on DDIs, and could thus facilitate the regulatory agencies’ pharmocovigilance of newly licensed drugs.
机译:已开发了人工神经网络(ANN),可使用从基于Web的资源Lexi-comp®和Vidal®收集的数据,预测一组35种药物的药物相互作用(DDI)的临床意义。由各种药物药代动力学(PK)和/或药效学(PD)特性和/或药物-酶相互作用数据提供的输入。发现DDI重要性预测的成功取决于用作ANN输入的药物特性,并且也随训练中使用的DDI数据集而变化。发现Lexicomp®数据集的预测要比使用Vidal®数据集获得的预测略好,其中仅使用单独的酶变量训练的多层感知器(MLP)模型就可以获得最佳的次要DDI预测(F1 82%)并使用仅针对PK / PD属性进行训练的MLP模型(F1为54%)实现了对主要DDI的最佳预测。考虑到DDI数据的更全面,更一致的数据集,我们得出结论,可以使用机器学习工具获取有关DDI的新知识,从而可以促进监管机构对新许可药物的药物警戒。

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