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Two-Dimensional Wang–Landau Algorithm for Osmotic Pressure Calculations in a Polyelectrolyte–Membrane System

机译:二维电解质膜系统中渗透压计算的Wang-Landau二维算法

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摘要

The Monte Carlo method based on two-dimensional entropic sampling within the Wang–Landau (WL) algorithm is applied to simulation of a continuous model of a polyelectrolyte between membrane surfaces. Membranes are presented by parallel plane surfaces holding either fixed or mobile dipoles (representing lipid headgroups). A strongly charged polyion accompanied by neutralizing counterions is placed between the membranes. Periodic boundary conditions are imposed along X- and Y-axes. The volume of the main cell is varied during the simulation by shifting one of the surfaces along Z-axis. Within two-dimensional WL sampling algorithm we obtain joint density of states as a function of energy and volume in a single run. In order to increase efficiency of our calculations we introduce a number of modifications to the original WL-approach. Various properties of the system over wide temperature and volume or pressure ranges, i.e., conformational energy, heat capacity, and free energy, are obtained from the two-dimensional density of states by simple integration. The osmotic pressure is calculated as a derivative of Helmholtz free energy. Alternatively, properties of the system, including average volume, can be obtained under condition of NPT ensemble. It is shown that the both approaches produce coinciding Posm(V) isotherms. In all considered cases we observe repulsive effective interaction between the membrane surfaces, and repulsion is stronger for the surfaces with fixed dipoles.
机译:在Wang-Landau(WL)算法中基于二维熵采样的蒙特卡罗方法被用于模拟膜表面之间的聚电解质的连续模型。膜由固定或活动偶极子(表示脂质头基)的平行平面表示。在膜之间放置带中和抗衡离子的强电荷聚离子。沿X轴和Y轴施加周期性边界条件。在模拟过程中,通过沿Z轴移动表面之一来更改主单元的体积。在二维WL采样算法中,我们可以在单次运行中获得作为能量和体积函数的状态联合密度。为了提高我们的计算效率,我们对原始的WL方法进行了许多修改。通过简单的积分从二维状态密度获得系统在宽温度和体积或压力范围内的各种性质,即构象能,热容量和自由能。渗透压被计算为亥姆霍兹自由能的导数。或者,可以在NPT集成的条件下获得系统的属性,包括平均体积。结果表明,两种方法都产生一致的Posm(V)等温线。在所有考虑的情况下,我们观察到膜表面之间的排斥有效相互作用,并且对于具有固定偶极子的表面,排斥作用更强。

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