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Importance of the conserved residues in the peptidoglycan glycosyltransferase module of the class A penicillin-binding protein 1b of Escherichia coli.

机译:大肠杆菌A类青霉素结合蛋白1b的肽聚糖糖基转移酶模块中保守残基的重要性。

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摘要

The peptidoglycan glycosyltransferase (GT) module of class A penicillin-binding proteins (PBPs) and monofunctional GTs catalyze glycan chain elongation of the bacterial cell wall. These enzymes belong to the GT51 family, are characterized by five conserved motifs, and have some fold similarity with the phage lambda lysozyme. In this work, we have systematically modified all the conserved amino acid residues of the GT module of Escherichia coli class A PBP1b by site-directed mutagenesis and determined their importance for the in vivo and in vitro activity and the thermostability of the protein. To get an insight into the GT active site of this paradigm enzyme, a model of PBP1b GT domain was constructed based on the available crystal structures (PDB codes 2OLV and 2OLU). The data show that in addition to the essential glutamate residues Glu233 of motif 1 and Glu290 of motif 3, the residues Phe237 and His240 of motif 1 and Gly264, Thr267, Gln271, and Lys274 of motif 2, all located in the catalytic cavity of the GT domain, are essential for the in vitro enzymatic activity of the PBP1b and for its in vivo functioning. Thus, the first three conserved motifs contain most of the residues that are required for the GT activity of the PBP1b. The residues Asp234, Phe237, His240, Thr267, and Gln271 are proposed to maintain the structure of the active site and the positioning of the catalytic Glu233.
机译:A类青霉素结合蛋白(PBP)和单功能GT的肽聚糖糖基糖基转移酶(GT)模块催化细菌细胞壁的聚糖链延长。这些酶属于GT51家族,具有五个保守的基序,并且与噬菌体λ溶菌酶具有相似的折叠相似性。在这项工作中,我们通过定点诱变系统地修饰了A类大肠杆菌PBP1b的GT模块的所有保守氨基酸残基,并确定了它们对于蛋白质的体内和体外活性以及热稳定性的重要性。为了深入了解该范例酶的GT活性位点,基于可用的晶体结构(PDB代码2OLV和2OLU)构建了PBP1b GT域模型。数据显示,除了基序1的必需谷氨酸残基Glu233和基序3的Glu290外,基序1的残基Phe237和His240和基序2的Gly264,Thr267,Gln271和Lys274残基均位于酶的催化腔中。 GT域对于PBP1b的体外酶促活性及其体内功能至关重要。因此,前三个保守基序包含PBP1b GT活性所需的大多数残基。建议使用残基Asp234,Phe237,His240,Thr267和Gln271来维持活性位点的结构和催化Glu233的位置。

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