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LeafMachine: Using machine learning to automate leaf trait extraction from digitized herbarium specimens

机译:叶子手册:使用机器学习自动化数字化植物标目标本的叶子特征

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摘要

Premise Obtaining phenotypic data from herbarium specimens can provide important insights into plant evolution and ecology but requires significant manual effort and time. Here, we present LeafMachine, an application designed to autonomously measure leaves from digitized herbarium specimens or leaf images using an ensemble of machine learning algorithms. Methods and Results We trained LeafMachine on 2685 randomly sampled specimens from 138 herbaria and evaluated its performance on specimens spanning 20 diverse families and varying widely in resolution, quality, and layout. LeafMachine successfully extracted at least one leaf measurement from 82.0% and 60.8% of high‐ and low‐resolution images, respectively. Of the unmeasured specimens, only 0.9% and 2.1% of high‐ and low‐resolution images, respectively, were visually judged to have measurable leaves. Conclusions This flexible autonomous tool has the potential to vastly increase available trait information from herbarium specimens, and inform a multitude of evolutionary and ecological studies.
机译:前提是从植物标目标本获得表型数据可以为植物演化和生态学提供重要的见解,但需要进行重要的手动努力和时间。在这里,我们呈现Leafmachine,该应用程序旨在使用机器学习算法的集合自动测量从数字化的植物标本或叶图像的叶子。方法和结果我们在138枝幼王的2685个随机采样的标本上培训了叶片植物,并评估了其在跨越20家多元家庭的标本上的性能,并且在分辨率,质量和布局中广泛变化。叶子植物成功地从82.0%和60.8%的高和低分辨率图像中提取了至少一个叶子测量。在未测量的标本中,目视判断,仅有0.9%和2.1%的高分辨率图像,以进行可测量的叶子。结论这种灵活的自主工具有可能从植物标目典中大大增加可用的特质信息,并告知众多进化和生态研究。

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