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Differential gene expression in Entamoeba histolytica isolated from amoebic liver abscess

机译:从阿米巴肝脓肿中分离到的溶组织性变形杆菌中的差异基因表达

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The majority of human infections with the intestinal protozoan parasite Entamoeba histolytica remain asymptomatic. In a small proportion of infections, however, E. histolytica trophozoites penetrate the intestinal mucosa and disseminate to other organs, most commonly to the liver, where they induce abscess formation. It is believed that the ability of E. histolytica trophozoites to destroy host tissues and to survive within the liver is accomplished by a strong adaptive response, which requires the specific regulation of a number of amoeba proteins. Using differential display polymerase chain reaction (DD-PCR), we compared RNA expression between E. histolytica trophozoites isolated from liver abscesses of infected gerbils and those grown under normal culture conditions. A total of 3000 cDNA-derived amplicons were compared between the two groups of amoebae, which were calculated to represent about one-third of all E. histolytica mRNA species (transcriptome). Among these, 55 were found to be specifically present or absent in abscess-derived amoebae, of which 42 were successfully cloned and sequenced. Database searches and Northern blot analyses revealed that the 42 amplicons correspond to 29 independent E. histolytica genes, of which at least seven are specifically upregulated and five are downregulated in abscess-derived amoebae. Specific expression of most of these genes was not simply the result of a heat shock response, which might be expected during abscess formation, as only five of the genes revealed an expression profile similar to that found in amoebae cultured under elevated temperatures. The two genes specifically downregulated in abscess-derived amoebae encode members of a family of so far unknown proteins, which contain repetitive stretches of sequences that are rich in lysine and glutamic acid residues. In contrast, a diverse set of genes is specifically upregulated, encoding ribosomal proteins (S30, L37A), cyclophilin, ferredoxin 2 and GTP-binding protein RAB7D, supporting the notion that liver abscess formation requires the regu-lation and concerted action of a variety of amoeba proteins. These proteins are associated with stress response, signal transduction, regulation of transcription and vesicular trafficking. However, transcriptome analysis will not be sufficient to identify all proteins specifically upregulated during abscess formation, as at least an increase in the expression of actin was found to be regulated at the post-transcriptional level. [References: 34]
机译:人类的肠道原生动物寄生虫大多数感染仍无症状。然而,在感染的一小部分中,溶组织性大肠杆菌滋养体穿透肠道粘膜并扩散到其他器官,最常见的是扩散到肝脏,在肝脏中它们引起脓肿的形成。据信,组织溶解性大肠杆菌的滋养体破坏宿主组织并在肝脏中存活的能力是通过强烈的适应性反应实现的,这需要对许多变形虫蛋白进行特定的调节。使用差异显示聚合酶链反应(DD-PCR),我们比较了从感染沙土鼠肝脓肿中分离出的溶组织性埃希氏菌滋养体与在正常培养条件下生长的之间的RNA表达。在两组变形虫之间比较了总共3000个cDNA扩增子,经计算它们代表了所有溶血性大肠杆菌组织mRNA种类(转录组)的约三分之一。其中,发现55个在脓肿衍生的变形虫中特异存在或不存在,其中42个被成功克隆和测序。数据库搜索和Northern印迹分析表明,在脓肿衍生的变形虫中,这42个扩增子对应于29个独立的溶血性大肠杆菌基因,其中至少有7个被特异上调,而五个则被下调。大多数这些基因的特异性表达不仅仅是脓肿形成过程中热休克反应的结果,因为只有五个基因显示出与高温培养的变形虫相似的表达谱。在脓肿来源的变形虫中特别下调的两个基因编码了迄今为止未知的蛋白质家族的成员,这些蛋白质包含富含赖氨酸和谷氨酸残基的重复序列。相反,一组特定的基因被特异上调,编码核糖体蛋白(S30,L37A),亲环蛋白,铁氧还蛋白2和GTP结合蛋白RAB7D,支持肝脓肿的形成需要各种调节和协同作用的观念。变形虫蛋白。这些蛋白质与应激反应,信号转导,转录调节和囊泡运输有关。但是,转录组分析不足以鉴定脓肿形成过程中特异性上调的所有蛋白质,因为至少发现肌动蛋白表达的增加在转录后水平受到调控。 [参考:34]

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