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首页> 外文期刊>Journal of molecular modeling >Toward accurate prediction of amino acid derivatives structure and energetics from DFT: glycine conformers and their interconversions
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Toward accurate prediction of amino acid derivatives structure and energetics from DFT: glycine conformers and their interconversions

机译:从DFT中准确预测氨基酸衍生物结构和能量学:甘氨酸符合子及其互联器

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This work provides the accurate reference data for structural and energetic properties relevant for computational studies of amino acids and polypeptides. Glycine due to its small size allows for detailed theoretical explorations of its whole conformational space. The reference energies are computed at the CCSD(T)/CBS+CV level on the best estimated geometries of all local minima and the transition states. For the minima, we complete the set of reference structures reported in Phys. Chem. Chem. Phys., 2013, 15, 10094, by determining the CCSD(T)/(CBS+CV)(MP2) quality geometries for the two highest energy conformers VIIp/tcc and VIIIn/gtc. These data stand as the reference to asses reliability and accuracy of less expensive computational models, with particular focus on dispersion-corrected hybrid and double-hybrid DFT approaches, considering several basis sets of double- and triple-zeta quality. Based on results for minima the B2LYP-D3(BJ)/aug-cc-pVTZ level is set as the reference for transition states geometries. Considering accuracy of both single point energies and structural parameters B2PLYP(-D3BJ) and DSDPBEP86 in conjunction with aug-cc-pVTZ basis set can be recommended for reference studies of amino-acids and small poly-peptides, while B3LYP(-D3(BJ)) shown to be the most robust from considered hybrid DFT approaches.
机译:这项工作提供了与氨基酸和多肽的计算研究相关的结构和能量特性的准确参考数据。由于其小尺寸而导致的甘氨酸允许其整个构象空间的详细理论探索。参考能量在所有局部最小值和转换状态的最佳估计几何形状上以CCSD(T)/ CBS + CV电平计算。对于最小值,我们完成了物理中报告的一组参考结构。化学。化学。物理。,2013,15,10094,通过确定两个最高能量符合子的CCSD(T)/(CBS + CV)(MP2)质量几何形状VIIP / TCC和VIIIN / GTC。这些数据作为参考符合昂贵的计算模型的可靠性和准确性,特别侧重于分散校正的混合和双杂交DFT方法,考虑到几种基础双Zeta质量。基于最小值的结果,将B2LYP-D3(BJ)/ AUG-CC-PVTZ电平设置为转换状态几何形状的参考。考虑到单点能量和结构参数B2PLYP(-D3BJ)和DSDPBEP86的准确性,可以推荐与AUG-CC-PVTZ基础设定的基准组合,以参考氨基酸和小多肽,而B3LYP(-D3(BJ ))被认为是考虑混合DFT方法的最强大。

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