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Artificial neural network based screening of cervical cancer using a hierarchical modular neural network architecture (HMNNA) and novel benchmark uterine cervix cancer database

机译:基于人工神经网络的宫颈癌筛选使用分层模块化神经网络架构(HMNNA)和新型基准子宫颈癌数据库

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The work reported in this paper presents a novel hierarchical modular neural network architecture (HMNNA) for automated screening of cervical cancer. HMNNA consists of three neural networks trained specifically on different areas of problem space under consideration, and the trained networks are then arranged in a tree structure forming hierarchical modular neural network architecture. The three specialized neural networks are trained by Levenberg-Maarquardt neural network algorithm. As compared to the standard back propagation algorithm, Levenberg-Maarquardt is fast and stable for convergence with only one drawback, i.e., storage requirement for estimated Hessian Matrix. For training and testing of HMNNA, a huge primary database is created which contains 8091 cervical cell images pertaining to 200 clinical cases collected from two health care institutions of northern India. The raw cases of cervical cancer in the form of Pap smear slides were photographed under a multi-headed digital microscope. Individual cells were manually cropped off from these slide images which were then passed through a feature extraction module for morphological profiling. Each cell was calibrated on the basis of 40 features from both cytoplasm and nucleus. After profiling, these cells were vigilantly assigned cell classes as per the latest 2001-Bethesda system of cervical cancer cell classification, by trained cytotechnicians and histopathologists. HMNNA is also trained and tested on the Herlev Benchmark dataset created by the Denmark University, which consists of 1417 cervical cancer cells. Both the datasets have seven classes of diagnosis, i.e., superficial squamous, intermediate squamous, columnar, mild dysplasia, moderate dysplasia, severe dysplasia, and carcinoma in situ, corresponding to the level of abnormality in cervical cells. These datasets are available in public domain at http://digitalpapsmeardb.in/ and http://mde-lab.aegean.gr/index.php/downloads. The screening potential of the HMNNA is compared with 25 well-known machine learning algorithms available in MatlabR2016 (Machine learning and statistics toolbox 10.2) and monolithic neural network algorithms available in Matlab neural network pattern recognition toolbox. The HMNNA outperformed in all the 25 algorithms for both the datasets. For the Novel Benchmark database, it produced a classification accuracy of 95.32% with an F-value of 0.949310 and classification accuracy of 88.41% with an F-value of 0.89145 for the Herlev dataset. The screening potential of HMNNA was also evaluated and compared with the other diagnostic systems available in the recently published literature and was found to be performing much better than the counterparts on multiple parameters of performance evaluation.
机译:本文报道的工作提出了一种新型的分层模块化神经网络架构(HMNNA),用于宫颈癌的自动筛查。 HMNNA由专门针对所考虑的问题空间的不同区域培训的三个神经网络组成,然后在形成分层模块化神经网络架构的树结构中布置训练网络。三个专业的神经网络受到Levenberg-Maarquardt神经网络算法的培训。与标准回波传播算法相比,Levenberg-Maarquardt在收敛时快速稳定,仅具有一个缺点,即估计Hessian矩阵的存储要求。对于HMNNA的培训和测试,创建了一个巨大的主要数据库,其中包含来自印度北部两家医疗机构的200个临床病例的8091个宫颈细胞图像。在多头数字显微镜下拍摄了罂粟涂层形式的宫颈癌的原始案例。从这些滑动图像中手动裁剪单个细胞,然后通过特征提取模块进行形态分析。每种细胞的基础是从两种细胞质和细胞核的40个特征校准。在分析后,通过培训的细胞体系和组织病理学家,这些细胞每术宫颈癌细胞分类的最新2001-Bethesda系统敏锐地分配细胞类。 Hmnna还在丹麦大学创建的Herlev基准数据集上进行培训并测试,该数据集由1417个宫颈癌细胞组成。该数据集两种诊断,即肤浅的鳞状,中间鳞状,柱状,轻度发育不良,中度发育不良,严重发育不良和原位癌,对应于宫颈细胞中的异常水平。这些数据集可在http://digitalpapsmeardb.in/和http://mde-lab.aegean.gr/index.php/downloads中提供公共域名。将HMNNA的筛选电位与Matlabr2016(机器学习和统计工具箱10.2)中提供的25个可用的机器学习算法进行比较,以及Matlab神经网络模式识别工具箱中可用的单片神经网络算法。 HMNNA在所有25种算法中表现出两种数据集的所有25个算法。对于新型基准数据库,它产生了95.32%的分类精度,F值为0.949310,分类精度为88.41%,F值为Herlev数据集0.89145。还评估了HMNNA的筛查潜力,并与最近发表的文献中可用的其他诊断系统进行了比较,并且发现比绩效评估的多个参数上的对应物更好地表现得多。

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