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A new sequence data set of SSU rRNASSU rRNA gene for Scleractinia and its phylogenetic and ecological applications

机译： ssu rRNA Ssu rRNA基因的新序列数据集及其系统发育和生态应用

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Abstract > Scleractinian corals (i.e. hard corals) play a fundamental role in building and maintaining coral reefs, one of the most diverse ecosystems on Earth. Nevertheless, their phylogenies remain largely unresolved and little is known about dispersal and survival of their planktonic larval phase. The small subunit ribosomal <fc>RNA</fc> ( <fc>SSU rRNA</fc> ) is a commonly used gene for <fc>DNA</fc> barcoding in several metazoans, and small variable regions of <fc>SSU rRNA</fc> are widely adopted as barcode marker to investigate marine plankton community structure worldwide. Here, we provide a large sequence data set of the complete <fc>SSU rRNA</fc> gene from 298 specimens, representing all known extant reef coral families and a total of 106 genera. The secondary structure was extremely conserved within the order with few exceptions due to insertions or deletions occurring in the variable regions. Remarkable differences in <fc>SSU rRNA</fc> length and base composition were detected between and within acroporids ( Acropora , Montipora , Isopora and Alveopora ) compared to other corals. The V4 and V9 regions seem to be promising barcode loci because variation at commonly used barcode primer binding sites was extremely low, while their levels of divergence allowed families and genera to be distinguished. A?time‐calibrated phylogeny of Scleractinia is provided, and mutation rate heterogeneity is demonstrated across main lineages. The use of this data set as a valuable reference for investigating aspects of ecology, biology, molecular taxonomy and evolution of scleractinian corals is discussed. </abstract> </span> <span class="z_kbtn z_kbtnclass hoverxs" style="display: none;">展开▼</span> </div> <div class="translation abstracttxt"> <span class="zhankaihshouqi fivelineshidden" id="abstract"> <span>机译：</span><Abstract XMLNS =“http://www.wiley.com/namespaces/wiley”type =“main”xml：id =“men12640-abs-0001”> <标题类型=“main”>抽象</ title> < p>巩膜珊瑚珊瑚（即硬珊瑚）在建筑和维护珊瑚礁中发挥着基本作用，是地球上最多样化的生态系统之一。然而，它们的文学发生在很大程度上尚未解决，并且关于它们的浮游生物幼虫相的分散和存活少。小亚基核糖体<Fc> RNA </ Fc>（<Fc> Ssu rRNA </ Fc>）是常用的<Fc> DNA>条形码的常用基因，以及<Fc>的小可变区> SSU RRNA </ FC>被广泛采用作为条形码标记，以调查全球海洋浮游生物群落结构。在这里，我们提供了来自298个样本的完整<Fc> Ssu rRNA </ Fc>基因的大序列数据集，代表了所有已知的礁珊瑚家族和总共106个属。由于在可变区中发生的插入或缺失，次要结构在订单中非常省守。在acroporids（ arropora </ i>之间，在acroporids（ acropora，<ilopora </ i）之间检测到显着差异，在acroporids（ acropora </ i>之间，与其他珊瑚相比， Alveopora </ i>）。 V4和V9地区似乎是有前途的条形码基因座，因为常用的条形码引物结合位点的变化极低，而它们的分歧水平允许区分家庭和属。提供了Scleractinia的时间校准的系统发育，并且在主谱系上证明了突变率异质性。讨论了使用本数据作为研究生态，生物学，分子分类学和巩膜珊瑚珊瑚的演化的重要参考。 </ p> </ abstract> </span> <span class="z_kbtn z_kbtnclass hoverxs" style="display: none;">展开▼</span> </div> </div> <div class="record"> <h2 class="all_title" id="enpatent33" >著录项</h2> <ul> <li> <span class="lefttit">来源</span> <div style="width: 86%;vertical-align: text-top;display: inline-block;"> <a href='/journal-foreign-25257/'>《Molecular ecology resources》</a> <b style="margin: 0 2px;">|</b><span>2017年第5期</span><b style="margin: 0 2px;">|</b><span>共18页</span> </div> </li> <li> <div class="author"> <span class="lefttit">作者</span> <p id="fAuthorthree" class="threelineshidden zhankaihshouqi"> <a href="/search.html?doctypes=4_5_6_1-0_4-0_1_2_3_7_9&sertext=Arrigoni Roberto&option=202" target="_blank" rel="nofollow">Arrigoni Roberto;</a> <a href="/search.html?doctypes=4_5_6_1-0_4-0_1_2_3_7_9&sertext=Vacherie Beno?t&option=202" target="_blank" rel="nofollow">Vacherie Beno?t;</a> <a href="/search.html?doctypes=4_5_6_1-0_4-0_1_2_3_7_9&sertext=Benzoni Francesca&option=202" target="_blank" rel="nofollow">Benzoni Francesca;</a> <a href="/search.html?doctypes=4_5_6_1-0_4-0_1_2_3_7_9&sertext=Stefani Fabrizio&option=202" target="_blank" rel="nofollow">Stefani Fabrizio;</a> <a href="/search.html?doctypes=4_5_6_1-0_4-0_1_2_3_7_9&sertext=Karsenti Eric&option=202" target="_blank" rel="nofollow">Karsenti Eric;</a> <a href="/search.html?doctypes=4_5_6_1-0_4-0_1_2_3_7_9&sertext=Jaillon Olivier&option=202" target="_blank" rel="nofollow">Jaillon Olivier;</a> <a href="/search.html?doctypes=4_5_6_1-0_4-0_1_2_3_7_9&sertext=Not Fabrice&option=202" target="_blank" rel="nofollow">Not Fabrice;</a> <a href="/search.html?doctypes=4_5_6_1-0_4-0_1_2_3_7_9&sertext=Nunes Flavia&option=202" target="_blank" rel="nofollow">Nunes Flavia;</a> <a href="/search.html?doctypes=4_5_6_1-0_4-0_1_2_3_7_9&sertext=Payri Claude&option=202" target="_blank" rel="nofollow">Payri Claude;</a> <a href="/search.html?doctypes=4_5_6_1-0_4-0_1_2_3_7_9&sertext=Wincker Patrick&option=202" target="_blank" rel="nofollow">Wincker Patrick;</a> <a href="/search.html?doctypes=4_5_6_1-0_4-0_1_2_3_7_9&sertext=Barbe Valérie&option=202" target="_blank" rel="nofollow">Barbe Valérie;</a> </p> <span class="z_kbtnclass z_kbtnclassall hoverxs" id="zkzz" style="display: none;">展开▼</span> </div> </li> <li> <div style="display: flex;"> <span class="lefttit">作者单位</span> <div style="position: relative;margin-left: 3px;max-width: 639px;"> <div class="threelineshidden zhankaihshouqi" id="fOrgthree"> <p>Red Sea Research CenterKing Abdullah University of Science and TechnologyThuwal 23955‐6900 Saudi Arabia;</p> <p>CEA/DSV/IG/GenoscopeEvry Cedex France;</p> <p>Department of Biotechnology and BiosciencesUniversity of Milano‐BicoccaPiazza della Scienza 2 Milan 20126 Italy;</p> <p>Water Research Institute–National Research Council (IRSA‐CNR)Via del Mulino 19 Brugherio I‐20861 Italy;</p> <p>Ecole Normale SupérieureInstitut de Biologie de l'ENS (IBENS) and Inserm U1024 and CNRS UMR 8197Paris F‐75005 France;</p> <p>CEA/DSV/IG/GenoscopeEvry Cedex France;</p> <p>UPMC‐CNRSStation Biologique de RoscoffPlace Georges Teissier Roscoff 29680 France;</p> <p>Ifremer Centre BretagneLaboratoire d’écologie Benthique C?tière (LEBCO)29280 Plouzané France;</p> <p>Institut de Recherche pour le Développement101 Promenade Roger Laroque BP A5 Noumea Cedex 98848 New Caledonia;</p> <p>CEA/DSV/IG/GenoscopeEvry Cedex France;</p> <p>CEA/DSV/IG/GenoscopeEvry Cedex France;</p> </div> <span class="z_kbtnclass z_kbtnclassall hoverxs" id="zhdw" style="display: none;">展开▼</span> </div> </div> </li> <li > <span class="lefttit">收录信息</span> <span style="width: 86%;vertical-align: text-top;display: inline-block;"></span> </li> <li> <span class="lefttit">原文格式</span> <span>PDF</span> </li> <li> <span class="lefttit">正文语种</span> <span>eng</span> </li> <li> <span class="lefttit">中图分类</span> <span><a href="https://www.zhangqiaokeyan.com/clc/179.html" title="分子生物学">分子生物学;</a></span> </li> <li class="antistop"> <span class="lefttit">关键词</span> <p style="width: 86%;vertical-align: text-top;"> <a style="color: #3E7FEB;" href="/search.html?doctypes=4_5_6_1-0_4-0_1_2_3_7_9&sertext=cnidarians&option=203" rel="nofollow">cnidarians;</a> <a style="color: #3E7FEB;" href="/search.html?doctypes=4_5_6_1-0_4-0_1_2_3_7_9&sertext=gene structure and function&option=203" rel="nofollow">gene structure and function;</a> <a style="color: #3E7FEB;" href="/search.html?doctypes=4_5_6_1-0_4-0_1_2_3_7_9&sertext=hard corals&option=203" rel="nofollow">hard corals;</a> <a style="color: #3E7FEB;" href="/search.html?doctypes=4_5_6_1-0_4-0_1_2_3_7_9&sertext=hypervariable region&option=203" rel="nofollow">hypervariable region;</a> <a style="color: #3E7FEB;" href="/search.html?doctypes=4_5_6_1-0_4-0_1_2_3_7_9&sertext=molecular evolution&option=203" rel="nofollow">molecular evolution;</a> <a style="color: #3E7FEB;" href="/search.html?doctypes=4_5_6_1-0_4-0_1_2_3_7_9&sertext=systematics&option=203" rel="nofollow">systematics;</a> </p> <div class="translation"> 机译：Cnidarians;基因结构和功能;硬珊瑚;高变区域;分子演变;系统性; </div> </li> </ul> </div> </div> <div class="literature cardcommon"> <div class="similarity "> <h3 class="all_title" id="enpatent66">相似文献</h3> <div class="similaritytab clearfix"> <ul> <li class="active" >外文文献</li> <li >中文文献</li> <li >专利</li> </ul> </div> <div class="similarity_details"> <ul > <li> <div> <b>1. </b><a class="enjiyixqcontent" href="/journal-foreign-detail/0704023742866.html">A new sequence data set of <fc xmlns="http://www.wiley.com/namespaces/wiley">SSU rRNA</fc>SSU rRNA gene for Scleractinia and its phylogenetic and ecological applications</a> <b>[J]</b> . <span> <a href="/search.html?doctypes=4_5_6_1-0_4-0_1_2_3_7_9&sertext=Arrigoni Roberto&option=202" target="_blank" rel="nofollow" class="tuijian_auth tuijian_authcolor">Arrigoni Roberto,</a> <a 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inferred from the SSU rRNA gene sequence</a> <b>[O] </b> . <span> <a href="/search.html?doctypes=4_5_6_1-0_4-0_1_2_3_7_9&sertext=Iva Dyková&option=202" target="_blank" rel="nofollow" class="tuijian_auth tuijian_authcolor">Iva Dyková,</a> <a href="/search.html?doctypes=4_5_6_1-0_4-0_1_2_3_7_9&sertext=Tomáš Tyml&option=202" target="_blank" rel="nofollow" class="tuijian_auth tuijian_authcolor">Tomáš Tyml,</a> <a href="/search.html?doctypes=4_5_6_1-0_4-0_1_2_3_7_9&sertext=Ivan Fiala&option=202" target="_blank" rel="nofollow" class="tuijian_auth tuijian_authcolor">Ivan Fiala,</a> <span>2007</span> </span> </div> <p class="zwjiyix translation" style="max-width: initial;height: auto;word-break: break-all;white-space: initial;text-overflow: initial;overflow: initial;"> <span>机译：Soricimyxum Fegati（myxozoa）的新数据，包括从SSU rRNA基因序列推断的系统发育位置分析</span> </p> </li> </ul> <ul style="display: none;"> <li> <div> <b>1. </b><a class="enjiyixqcontent" href="/academic-journal-cn_chinese-journal-zoonoses_thesis/0201231586056.html">陕西省韩城市利什曼原虫SSU rRNA基因系统发育研究</a> <b>[J]</b> <span> <a href="/search.html?doctypes=4_5_6_1-0_4-0_1_2_3_7_9&sertext=张铮&option=202" target="_blank" rel="nofollow" class="tuijian_auth tuijian_authcolor"> . 张铮</a> <a href="/search.html?doctypes=4_5_6_1-0_4-0_1_2_3_7_9&sertext=李欣妍&option=202" target="_blank" rel="nofollow" class="tuijian_auth tuijian_authcolor">,李欣妍</a> <a href="/search.html?doctypes=4_5_6_1-0_4-0_1_2_3_7_9&sertext=刘东立&option=202" target="_blank" rel="nofollow" class="tuijian_auth tuijian_authcolor">,刘东立</a> <span> <a href="/journal-cn-6007/" target="_blank" rel="nofollow" class="tuijian_authcolor"> . 中国人兽共患病学报 </a> </span> <span> . 2018</span><span>,第006期</span> </span> </div> </li> <li> <div> <b>2. </b><a class="enjiyixqcontent" href="/academic-journal-cn_acta-parasitologica-medica-entomologica-sinica_thesis/0201289417593.html">山西省及周边地区利什曼原虫SSU rRNA基因和ITS-1序列克隆及序列系统进化分析∗</a> <b>[J]</b> <span> <a href="/search.html?doctypes=4_5_6_1-0_4-0_1_2_3_7_9&sertext=吴云&option=202" target="_blank" rel="nofollow" class="tuijian_auth tuijian_authcolor"> . 吴云</a> <a href="/search.html?doctypes=4_5_6_1-0_4-0_1_2_3_7_9&sertext=安亦军&option=202" target="_blank" rel="nofollow" class="tuijian_auth tuijian_authcolor">,安亦军</a> <a href="/search.html?doctypes=4_5_6_1-0_4-0_1_2_3_7_9&sertext=齐志群&option=202" target="_blank" rel="nofollow" class="tuijian_auth tuijian_authcolor">,齐志群</a> <span> <a href="/journal-cn-5766/" target="_blank" rel="nofollow" class="tuijian_authcolor"> . 寄生虫与医学昆虫学报 </a> </span> <span> . 2021</span><span>,第001期</span> </span> </div> </li> <li> <div> <b>3. </b><a class="enjiyixqcontent" href="/academic-journal-cn_acta-parasitologica-medica-entomologica-sinica_thesis/0201288778960.html">山西省及周边地区利什曼原虫SSU rRNA基因和ITS-1序列克隆及序列系统进化分析</a> <b>[J]</b> <span> <a href="/search.html?doctypes=4_5_6_1-0_4-0_1_2_3_7_9&sertext=吴云&option=202" target="_blank" rel="nofollow" class="tuijian_auth tuijian_authcolor"> . 吴云</a> <a href="/search.html?doctypes=4_5_6_1-0_4-0_1_2_3_7_9&sertext=安亦军&option=202" target="_blank" rel="nofollow" class="tuijian_auth tuijian_authcolor">,安亦军</a> <a href="/search.html?doctypes=4_5_6_1-0_4-0_1_2_3_7_9&sertext=齐志群&option=202" target="_blank" rel="nofollow" class="tuijian_auth tuijian_authcolor">,齐志群</a> <span> <a href="/journal-cn-5766/" target="_blank" rel="nofollow" class="tuijian_authcolor"> . 寄生虫与医学昆虫学报 </a> </span> <span> . 2021</span><span>,第001期</span> </span> </div> </li> <li> <div> <b>4. </b><a class="enjiyixqcontent" href="/academic-journal-cn_acta-microbiologica-sinica_thesis/0201255180500.html">裳卷蛾变形孢虫SSU rRNA核心序列的克隆与系统发育分析</a> <b>[J]</b> <span> <a href="/search.html?doctypes=4_5_6_1-0_4-0_1_2_3_7_9&sertext=马露芸&option=202" target="_blank" rel="nofollow" class="tuijian_auth tuijian_authcolor"> . 马露芸</a> <a href="/search.html?doctypes=4_5_6_1-0_4-0_1_2_3_7_9&sertext=涂增&option=202" target="_blank" rel="nofollow" class="tuijian_auth tuijian_authcolor">,涂增</a> <a href="/search.html?doctypes=4_5_6_1-0_4-0_1_2_3_7_9&sertext=薛英伟&option=202" target="_blank" rel="nofollow" class="tuijian_auth tuijian_authcolor">,薛英伟</a> <span> <a href="/journal-cn-5094/" target="_blank" rel="nofollow" class="tuijian_authcolor"> . 微生物学报 </a> </span> <span> . 2008</span><span>,第011期</span> </span> </div> </li> <li> <div> <b>5. </b><a class="enjiyixqcontent" href="/academic-degree-domestic_mphd_thesis/020313438313.html">应用AFLP技术和16SrRNA基因序列分析五种海胆遗传多样性和系统发育</a> <b>[A] </b> <span> <a href="/search.html?doctypes=4_5_6_1-0_4-0_1_2_3_7_9&sertext=刘晓慧&option=202" target="_blank" rel="nofollow" class="tuijian_auth tuijian_authcolor"> . 刘晓慧</a> <span> . 2006</span> </span> </div> </li> </ul> <ul style="display: none;"> <li> <div> <b>1. </b><a class="enjiyixqcontent" href="/patent-detail/06120103848233.html">吮噬虫SSU rRNA基因及其引物在检测吮噬虫中的应用及检测吮噬虫的试剂盒和方法</a> <b>[P]</b> . <span> 中国专利： CN111286553A </span> <span> . 2020-06-16</span> </div> </li> <li> <div> <b>2. </b><a class="enjiyixqcontent" href="/patent-detail/06130413086431.html">Selective PCR amplification of SSU rRNA gene of endophytic fungi by LNA clamp technology</a> <b>[P]</b> . <span> 外国专利： <!-- 日本专利： --> JP5846496B2 </span> <span> . 2016-01-20</span> </div> <p class="zwjiyix translation" style="max-width: initial;height: auto;word-break: break-all;white-space: initial;text-overflow: initial;overflow: initial;"> <span>机译：LNA钳技术选择性PCR扩增内生真菌SSU rRNA基因。 </span> </p> </li> <li> <div> <b>3. </b><a class="enjiyixqcontent" href="/patent-detail/06130421511455.html">SELECTIVE PCR AMPLIFICATION METHOD OF SSU rRNA GENE OF PLANT ENDOPHYTE BY LNA CLAMP TECHNOLOGY</a> <b>[P]</b> . <span> 外国专利： <!-- 日本专利： --> JP2013223428A </span> <span> . 2013-10-31</span> </div> <p class="zwjiyix translation" style="max-width: initial;height: auto;word-break: break-all;white-space: initial;text-overflow: initial;overflow: initial;"> <span>机译：LNA CLAMP技术对植物内生植物SSU rRNA基因的选择性PCR扩增方法 </span> </p> </li> <li> <div> <b>4. </b><a class="enjiyixqcontent" href="/patent-detail/06130421766028.html">Method for identification of radio frequency identification (RFID)/near field communication (NFC) device, involves comparing data sets generated in RFID/NFC application unit and RFID/NFC device</a> <b>[P]</b> . <span> 外国专利： <!-- 德国专利： --> DE102010046973A1 </span> <span> . 2012-03-29</span> </div> <p class="zwjiyix translation" style="max-width: initial;height: auto;word-break: break-all;white-space: initial;text-overflow: initial;overflow: initial;"> <span>机译：用于识别射频识别（rfid）/近场通信（NFC）设备的方法，涉及比较在RFID / NFC应用单元和RFID / NFC设备中生成的数据集 </span> </p> </li> </ul> </div> </div> </div> <div class="theme cardcommon" style="overflow: auto;display:none"> <h3 class="all_title" id="enpatent55">相关主题</h3> <ul id="subject"> </ul> </div> </div> </div> </div> <div class="right rightcon"> <div class="details_img cardcommon clearfix" style="margin-bottom: 10px;display:none;" > </div> </div> </div> <div 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