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The homogeneity condition: A simple way to derive isotropic periodic sum potentials for efficient calculation of long-range interactions in molecular simulation

机译:同质性条件:衍生各向同性周期性水势的简单方法,以便有效地计算分子模拟中的远程相互作用

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摘要

Isotropic periodic sum (IPS) is a method to calculate long-range interactions based on the homogeneity of simulation systems. By using the isotropic periodic images of a local region to represent remote structures, long-range interactions become a function of the local conformation. This function is called the IPS potential, which folds long-ranged interactions into a short-ranged potential and can be calculated as efficiently as a cutoff method. Analytic solutions of IPS potentials have been solved for many interaction types. To further simplify the application of the IPS method, this work presents the homogeneity condition, which requires the sum of interaction energies for any particle to be independent of cutoff distances for a truly homogeneous system. Using the homogeneity condition, one can avoid the complicated mathematic work to solve analytic solutions and can instead use simple functions as IPS potentials. Example simulations are performed for model systems of a series of interaction types. Energies, volumes, and their fluctuations from these simulations demonstrate that simple IPS potentials obtained through the homogeneity condition can satisfactorily describe long-range interactions. The homogeneity condition makes the IPS method a convenient way to handle long-range interactions of any type.
机译:各向同性周期性(IPS)是一种基于模拟系统的均匀性计算远程相互作用的方法。通过使用局部区域的各向同性周期图像来表示远程结构,远程交互成为局部构象的函数。该函数称为IPS电位,其将长距离的相互作用折叠成短传出电位,并且可以作为截止方法有效地计算。对于许多相互作用类型,已经解决了IPS电位的分析解决方案。为了进一步简化IPS方法的应用,该工作呈现了均匀性条件,这需要用于任何颗粒的相互作用能量与真正均匀系统的截止距离无关。使用同质性条件,可以避免复杂的数学工作来解决分析解决方案,而是可以使用简单的功能作为IPS电位。对一系列交互类型的模型系统执行示例仿真。来自这些模拟的能量,卷和它们的波动表明,通过同质性地获得的简单IPS电位可以令人满意地描述远程相互作用。同质性条件使IPS方法是处理任何类型的远程相互作用的方便方式。

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