...
首页> 外文期刊>The Journal of Chemical Physics >A geometrical correction for the inter- and intra-molecular basis set superposition error in Hartree-Fock and density functional theory calculations for large systems
【24h】

A geometrical correction for the inter- and intra-molecular basis set superposition error in Hartree-Fock and density functional theory calculations for large systems

机译:Hartree-Fock中分子间和分子内基集叠加误差的几何校正以及大型系统的密度泛函理论计算

获取原文
获取原文并翻译 | 示例
           

摘要

A semi-empirical counterpoise-type correction for basis set superposition error (BSSE) in molecular systems is presented. An atom pair-wise potential corrects for the inter- and intra-molecular BSSE in supermolecular Hartree-Fock (HF) or density functional theory (DFT) calculations. This geometrical counterpoise (gCP) denoted scheme depends only on the molecular geometry, i.e., no input from the electronic wave-function is required and hence is applicable to molecules with ten thousands of atoms. The four necessary parameters have been determined by a fit to standard Boys and Bernadi counterpoise corrections for Hobzas S668 set of non-covalently bound complexes (528 data points). The methods target are small basis sets (e.g., minimal, split-valence, 6-31G), but reliable results are also obtained for larger triple- sets. The intermolecular BSSE is calculated by gCP within a typical error of 10-30 that proves sufficient in many practical applications. The approach is suggested as a quantitative correction in production work and can also be routinely applied to estimate the magnitude of the BSSE beforehand. The applicability for biomolecules as the primary target is tested for the crambin protein, where gCP removes intramolecular BSSE effectively and yields conformational energies comparable to def2-TZVP basis results. Good mutual agreement is also found with Jensens ACP(4) scheme, estimating the intramolecular BSSE in the phenylalanine-glycine- phenylalanine tripeptide, for which also a relaxed rotational energy profile is presented. A variety of minimal and double- basis sets combined with gCP and the dispersion corrections DFT-D3 and DFT-NL are successfully benchmarked on the S22 and S66 sets of non-covalent interactions. Outstanding performance with a mean absolute deviation (MAD) of 0.51 kcal/mol (0.38 kcal/mol after D3-refit) is obtained at the gCP-corrected HF-D3/(minimal basis) level for the S66 benchmark. The gCP-corrected B3LYP-D3/6-31G* model chemistry yields MAD0.68 kcal/mol, which represents a huge improvement over plain B3LYP/6-31G* (MAD2.3 kcal/mol). Application of gCP-corrected B97-D3 and HF-D3 on a set of large protein-ligand complexes prove the robustness of the method. Analytical gCP gradients make optimizations of large systems feasible with small basis sets, as demonstrated for the inter-ring distances of 9-helicene and most of the complexes in Hobzas S22 test set. The method is implemented in a freely available FORTRAN program obtainable from the authors website.
机译:提出了分子系统中基集叠加误差(BSSE)的半经验平衡态修正。在超分子Hartree-Fock(HF)或密度泛函理论(DFT)计算中,分子对和分子内BSSE的原子对势能校正。该几何平衡地(gCP)表示的方案仅取决于分子几何形状,即,不需要来自电子波函数的输入,因此适用于具有一万个原子的分子。四个必要参数已通过适用于非共价结合复合物的Hobzas S668组的标准Boys和Bernadi平衡校正(528个数据点)确定。该方法的目标是小的基础集(例如,最小,分裂价,6-31G),但是对于较大的三集也可以获得可靠的结果。分子间BSSE由gCP计算得出,典型误差为10-30,在许多实际应用中已证明足够。建议将该方法作为生产工作中的定量校正方法,也可以常规应用于事先估算BSSE的幅度。测试了以生物分子为主要靶标的Crambin蛋白,其中gCP有效去除了分子内BSSE,并产生了与def2-TZVP基础结果相当的构象能量。在Jensens ACP(4)方案中也发现了良好的相互协议,该方案估计了苯丙氨酸-甘氨酸-苯丙氨酸三肽中的分子内BSSE,并为此提供了轻松的旋转能谱。结合gCP和色散校正DFT-D3和DFT-NL的各种最小和双重基集已成功地以S22和S66非共价相互作用集为基准。在SCP基准的经gCP校正的HF-D3 /(最低基准)水平下,获得的平均绝对偏差(MAD)为0.51 kcal / mol(D3修复后为0.38 kcal / mol)的出色性能。经gCP校正的B3LYP-D3 / 6-31G *模型化学试剂的产量为MAD0.68 kcal / mol,与普通的B3LYP / 6-31G *(MAD2.3 kcal / mol)相比,有很大的提高。 gCP校正的B97-D3和HF-D3在一组大型蛋白质-配体复合物中的应用证明了该方法的鲁棒性。 gCP的分析梯度使使用小基集的大型系统的优化成为可能,如Hobzas S22测试集中9-螺旋的环间距离和大多数络合物所证明的。该方法在可从作者网站获得的免费的FORTRAN程序中实现。

著录项

相似文献

  • 外文文献
  • 中文文献
  • 专利
获取原文

客服邮箱:kefu@zhangqiaokeyan.com

京公网安备:11010802029741号 ICP备案号:京ICP备15016152号-6 六维联合信息科技 (北京) 有限公司©版权所有
  • 客服微信

  • 服务号