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首页> 外文期刊>The Journal of Chemical Physics >Combining quantum wavepacket ab initio molecular dynamics with QM/MM and QM/QM techniques: Implementation blending ONIOM and empirical valence bond theory
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Combining quantum wavepacket ab initio molecular dynamics with QM/MM and QM/QM techniques: Implementation blending ONIOM and empirical valence bond theory

机译:将量子波包从头算分子动力学与QM / MM和QM / QM技术相结合:将ONIOM和经验价键理论相结合的实现

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We discuss hybrid quantum-mechanics/molecular-mechanics (QM/MM) and quantum mechanics/quantum mechanics (QM/QM) generalizations to our recently developed quantum wavepacket ab initio molecular dynamics methodology for simultaneous dynamics of electrons and nuclei. The approach is a synergy between a quantum wavepacket dynamics, ab initio molecular dynamics, and the ONIOM scheme. We utilize this method to include nuclear quantum effects arising from a portion of the system along with a simultaneous description of the electronic structure. The generalizations provided here make the approach a potentially viable alternative for large systems. The quantum wavepacket dynamics is performed on a grid using a banded, sparse, and Toeplitz representation of the discrete free propagator, known as the "distributed approximating functional." Grid-based potential surfaces for wavepacket dynamics are constructed using an empirical valence bond generalization of ONIOM and further computational gains are achieved through the use of our recently introduced time-dependent deterministic sampling technique. The ab initio molecular dynamics is achieved using Born-Oppenheimer dynamics. All components of the methodology, namely, quantum dynamics and ONIOM molecular dynamics, are harnessed together using a time-dependent Hartree-like procedure. We benchmark the approach through the study of structural and vibrational properties of molecular, hydrogen bonded clusters inclusive of electronic, dynamical, temperature, and critical quantum nuclear effects. The vibrational properties are constructed through a velocity/flux correlation function formalism introduced by us in an earlier publication. (C) 2008 American Institute of Physics.
机译:我们讨论了混合量子力学/分子力学(QM / MM)和量子力学/量子力学(QM / QM)归纳到我们最近开发的量子波包从头计算分子动力学方法的电子和原子核同时动力学。该方法是量子波包动力学,从头算分子动力学和ONIOM方案之间的协同作用。我们利用这种方法包括由系统的一部分引起的核量子效应以及电子结构的同时描述。此处提供的概括使该方法成为大型系统的潜在可行替代方法。使用离散的自由传播器的带状,稀疏和Toeplitz表示在网格上执行量子波包动力学,称为“分布式近似函数”。使用ONIOM的经验价键泛化构造了用于波包动力学的基于网格的潜在表面,并通过使用我们最近引入的时间相关的确定性采样技术获得了进一步的计算增益。从头算分子动力学是使用Born-Oppenheimer动力学实现的。方法学的所有组成部分,即量子动力学和ONIOM分子动力学,都使用与时间相关的类似Hartree的程序进行整合。我们通过研究分子,氢键簇的结构和振动特性(包括电子,动力学,温度和临界量子核效应)来对方法进行基准测试。振动特性是通过我们在较早的出版物中引入的速度/磁通相关函数形式来构造的。 (C)2008美国物理研究所。

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