首页> 外文期刊>The Journal of Chemical Physics >Analytic gradient for the QM/MM-Ewald method using charges derived from the electrostatic potential: Theory, implementation, and application to ab initio molecular dynamics simulation of the aqueous electron
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Analytic gradient for the QM/MM-Ewald method using charges derived from the electrostatic potential: Theory, implementation, and application to ab initio molecular dynamics simulation of the aqueous electron

机译:QM / MM-EWALD方法的分析梯度使用静电电位的电荷:理论,实施和应用于AB Initio分子动力学模拟的水性电子

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摘要

We report an implementation of periodic boundary conditions for mixed quantum mechanics/molecular mechanics (QM/MM) simulations, in which atomic partial charges are used to represent periodic images of the QM region. These charges are incorporated into the Fock matrix in a manner that preserves the variational nature of the self-consistent field procedure, and their interactions with the MM charges are summed using the conventional Ewald technique. To ensure that the procedure is stable in arbitrary basis sets, the atomic charges are derived by least-squares fit to the electrostatic potential generated by the QM region. We formulate and implement analytic energy gradients for the QM/MM-Ewald method and demonstrate that stable molecular dynamics simulations are thereby obtained. As a proof-of-concept application, we perform QM/MM simulations of a hydrated electron in bulk liquid water at the level of Hartree-Fock theory plus empirical dispersion. These simulations demonstrate that the "cavity model" of the aqueous electron, in which the spin density of the anionic defect is localized within an excluded volume in the liquid, is stable at room temperature on a time scale of at least several picoseconds. These results validate cavity-forming pseudopotential models of e(-)(aq) that have previously been derived from static-exchange Hartree-Fock calculations, and cast doubt upon whether non-cavity-forming pseudopotentials are faithful to the underlying Hartree-Fock calculation from which they were obtained.
机译:我们报告了用于混合量子力学/分子力学(QM / mm)模拟的周期边界条件的实施,其中原子部分电荷用于表示QM区域的周期图像。这些电荷以保留自一致性场过程的变分性的方式并入到套管基质中,并使用传统的Ewald技术来求和与MM电荷的相互作用。为了确保该过程以任意的基集稳定,原子电荷由符合QM区域产生的静电电位的最小二乘来导出。我们制定和实施QM / MM-EWALD方法的分析能量梯度,并证明由此获得稳定的分子动力学模拟。作为概念验证应用,我们在Hartree-Fock理论的水平加上散装液体水中的QM / MM模拟加上经验分散。这些模拟表明,含水电子的“腔模型”,其中阴离子缺陷的旋转密度在液体中排除在排除体积内,在室温下稳定在至少几个皮秒的时间等级。这些结果验证了先前来自静态交换Hartree-Fock计算的e( - )(aq)的腔形成伪软件模型,并赋予非空腔形成的伪能量是忠于潜在的Hartree-fock计算的疑虑从中获得它们。

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