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Adaptive resolution molecular-dynamics simulation:Changing the degrees of freedom on the fly

机译:自适应分辨率分子动力学模拟:动态更改自由度

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摘要

We present a new adaptive resolution technique for efficient particle-based multiscale molecular-dynamics simulations.The presented approach is tailor-made for molecular systems where atomistic resolution is required only in spatially localized domains whereas a lower mesoscopic level of detail is sufficient for the rest of the system.Our method allows an on-the-fly interchange between a given molecule's atomic and coarse-grained levels of description,enabling us to reach large length and time scales while spatially retaining atomistic details of the system.The new approach is tested on a model system of a liquid of tetrahedral molecules.The simulation box is divided into two regions:one containing only atomistically resolved tetrahedral molecules,and the other containing only one-particle coarse-grained spherical molecules.The molecules can freely move between the two regions while changing their level of resolution accordingly.The hybrid and the atomistically resolved systems have the same statistical properties at the same physical conditions.
机译:我们为高效的基于粒子的多尺度分子动力学仿真提供了一种新的自适应分辨率技术,该方法是为仅在空间局部域中需要原子分辨率而较低的介观详细程度足以满足其余要求的分子系统量身定制的方法我们的方法允许在给定分子的原子描述和粗粒度描述之间进行即时交换,使我们能够达到较大的长度和时间范围,同时在空间上保留系统的原子细节。在四面体分子液体的模型系统上,模拟框分为两个区域:一个区域仅包含原子分解的四面体分子,另一个区域仅包含一个粒子的粗粒球形分子,分子可以在两个区域之间自由移动区域,同时相应地更改其分辨率级别。混合系统和原子分辨系统具有在相同的物理条件下具有相同的统计特性。

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