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Molecular and Structural Insight into the Role of Key Residues of Thrombospondin-1 and Calreticulin in Thrombospondin-1-Calreticulin Binding

机译:分子和结构的洞察力,血小板反应蛋白-1和钙网蛋白的关键残基在血小板反应蛋白-1-钙网蛋白结合中的作用。

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Thrombospondin-1 (TSP1) binding to calreticulin (CRT) on the cell surface signals focal adhesion disassembly, leading to the intermediate adhesive phenotype, cell migration, anoikis resistance, and collagen stimulation. Residues Lys 24 and 32 in TSP1 and amino acids 24-26 and 32-34 in CRT have been shown through biochemical and cell-based approaches to be critical for TSP1-CRT binding and signaling. This study investigated the molecular and structural basis for these key TSP1 and CRT residues in TSP1-CRT binding. On the basis of a validated TSP1-CRT complex structure, we adopted steered molecular dynamics simulations to determine the effect of mutation of these key residues on TSP1-CRT binding and validated the simulation results with experimental observations. We further performed 30 ns molecular dynamics simulations for wild-type TSP1, CRT, K24A/K32A mutant TSP1, and mutant CRT (residues 24-26 and 32-34 mutated to Ala) and studied the conformational and structural changes in TSP1 and CRT as the result of mutation of these critical residues. Results showed that mutation of residues 24 and 32 to Ala in TSP1 and of amino acids 24-26 and 32-34 to Ala in CRT results in a shortened β-strand in the binding site, decreased hydrogen bond occupancy for β-strand pairs that arc located within or near the binding site, increased conformational flexibility of the binding site, a changed degree of dynamically correlated motion between the residues in the binding site and the oilier residues in protein, and a changed degree of overall correlated motion between the residues in the protein. These changes could directly contribute to the loss or weakened binding between TSP1 and CRT and the resultant effects on TSP1-CRT binding-induced cellular activities. Results from this study provide a molecular and structural insight into the role of these critical residues of TSP1 and CRT in TSP1-CRT binding.
机译:血小板反应蛋白1(TSP1)与细胞表面的钙网蛋白(CRT)结合可发出粘着斑拆卸信号,从而导致中间粘附表型,细胞迁移,抗厌食症和胶原蛋白刺激。 TSP1中的Lys 24和32残基以及CRT中的氨基酸24-26和32-34已通过生化和基于细胞的方法显示对TSP1-CRT结合和信号传导至关重要。这项研究调查了TSP1-CRT结合中这些关键TSP1和CRT残基的分子和结构基础。在验证的TSP1-CRT复杂结构的基础上,我们采用转向分子动力学模拟来确定这些关键残基的突变对TSP1-CRT结合的影响,并通过实验观察来验证模拟结果。我们进一步对野生型TSP1,CRT,K24A / K32A突变TSP1和突变CRT(残基24-26和32-34突变为Ala)进行了30 ns的分子动力学模拟,并研究了TSP1和CRT的构象和结构变化这些关键残基突变的结果。结果表明,TSP1中第24和32位残基突变为Ala,CRT中第24-26位氨基酸和32-34位氨基酸突变为CRT,导致结合位点中的β链缩短,β链对的氢键占有率降低,位于结合位点内或附近的弧,结合位点的构象柔性增加,结合位点中的残基与蛋白质中的油性残基之间的动态相关运动的改变程度以及蛋白质中残基之间的整体相关运动的改变程度蛋白质。这些变化可能直接导致TSP1和CRT之间的结合丧失或减弱,以及对TSP1-CRT结合诱导的细胞活性的最终影响。这项研究的结果为TSP1和CRT的这些关键残基在TSP1-CRT结合中的作用提供了分子和结构上的见识。

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