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Methods for assigning confidence to toxicity data with multiple values - Identifying experimental outliers

机译:为具有多个值的毒性数据分配置信度的方法-识别实验异常值

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摘要

The assessment of data quality is a crucial element in many disciplines such as predictive toxicology and risk assessment. Currently, the reliability of toxicity data is assessed on the basis of testing information alone (adherence to Good Laboratory Practice (GLP), detailed testing protocols, etc.). Common practice is to take one toxicity data point per compound - usually the one with the apparently highest reliability. All other toxicity data points (for the same experiment and compound) from other sources are neglected. To show the benefits of incorporating the "less reliable" data, a simple, independent, statistical approach to assess data quality and reliability on a mathematical basis was developed. A large data set of toxicity values to Aliivibrio fischeri was assessed. The data set contained 1813 data points for 1227 different compounds, including 203 identified as non-polar narcotic. Log Kow values were calculated and non-polar narcosis quantitative structure-activity relationship (QSAR) models were built. A statistical approach to data quality assessment, which is based on data outlier omission and confidence scoring, improved the linear QSARs. The results indicate that a beneficial method for using large data sets containing multiple data values per compound and highly variable study data has been developed. Furthermore this statistical approach can help to develop novel QSARs and support risk assessment by obtaining more reliable values for biological endpoints.
机译:在预测毒理学和风险评估等许多学科中,数据质量的评估是至关重要的元素。当前,仅根据测试信息(遵守良好实验室规范(GLP),详细的测试协议等)评估毒性数据的可靠性。通常的做法是每个化合物取一个毒性数据点-通常是表面上可靠性最高的一个数据点。忽略了其他来源的所有其他毒性数据点(对于同一实验和化合物)。为了显示合并“可靠性较差”数据的好处,开发了一种简单,独立的统计方法,可以在数学基础上评估数据质量和可靠性。评估了大数据对费氏弧菌的毒性数据。数据集包含1227种不同化合物的1813个数据点,其中203种被鉴定为非极性麻醉品。计算Log Kow值,并建立非极性麻醉性定量构效关系(QSAR)模型。基于数据异常遗漏和置信度评分的统计数据质量评估方法改善了线性QSAR。结果表明,已经开发出一种有益的方法,该方法可以使用包含每个化合物多个数据值和高度可变的研究数据的大数据集。此外,这种统计方法还可以通过获取更可靠的生物学终点值来帮助开发新颖的QSAR和支持风险评估。

著录项

  • 来源
    《Science of the total environment》 |2014年第1期|358-365|共8页
  • 作者单位

    School of Pharmacy and Chemistry, Liverpool John Moores University, Byrom Street, Liverpool L3 3AF, England, United Kingdom;

    School of Pharmacy and Chemistry, Liverpool John Moores University, Byrom Street, Liverpool L3 3AF, England, United Kingdom;

    School of Pharmacy and Chemistry, Liverpool John Moores University, Byrom Street, Liverpool L3 3AF, England, United Kingdom;

    School of Pharmacy and Chemistry, Liverpool John Moores University, Byrom Street, Liverpool L3 3AF, England, United Kingdom;

    School of Pharmacy and Chemistry, Liverpool John Moores University, Byrom Street, Liverpool L3 3AF, England, United Kingdom;

    School of Pharmacy and Chemistry, Liverpool John Moores University, Byrom Street, Liverpool L3 3AF, England, United Kingdom;

    School of Pharmacy and Chemistry, Liverpool John Moores University, Byrom Street, Liverpool L3 3AF, England, United Kingdom,School of Environmental Sciences, Northeast Normal University, Changchun, China;

    School of Pharmacy and Chemistry, Liverpool John Moores University, Byrom Street, Liverpool L3 3AF, England, United Kingdom;

  • 收录信息
  • 原文格式 PDF
  • 正文语种 eng
  • 中图分类
  • 关键词

    Data quality; Microtox; Confidence; QSAR; Predictive toxicology; Conflicting data;

    机译:数据质量;毒素置信度;QSAR;预测毒理学;数据冲突;

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