Long-Read Based Novel Sequence Insertion Detection With rCANID

Tao Jiang; Yilei Fu; Bo Liu; Yadong Wang

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Long-Read Based Novel Sequence Insertion Detection With rCANID

机译：基于长读的新型rCANID序列插入检测

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摘要

Novel sequence insertion (NSI) is an essential category of genome structural variations (SVs), which represents DNA segments absent from the reference genome assembly. It has important biological functions and strong correlation with phenotypes and diseas

机译：新型序列插入（NSI）是基因组结构变异（SV）的重要类别，它代表了参考基因组装配中不存在的DNA片段。它具有重要的生物学功能，并且与表型和疾病密切相关。

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来源
《IEEE transactions on nanobioscience》 |2019年第3期|343-352|共10页
作者
Tao Jiang; Yilei Fu; Bo Liu; Yadong Wang;
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作者单位

Center for Bioinformatics School of Computer Science and Technology Harbin Institute of Technology Harbin China;

Center for Bioinformati;

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原文格式 PDF
正文语种 eng
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关键词
Bioinformatics; Genomics; Sequential analysis; Tools; Nanobioscience; Task analysis; Throughput;

机译：生物信息学基因组学顺序分析;工具;纳米生物科学;任务分析;通量;

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专利

1. NKBOR, a mini-Tn10-based transposon for random insertion in the chromosome of Gram-negative bacteria and the rapid recovery of sequences flanking the insertion sites in Escherichia coli. [J] . Rossignol M, Basset A, Espeli O, Research in Microbiology . 2001,第5期

机译：NKBOR，一种基于微型Tn10的转座子，可随机插入革兰氏阴性细菌的染色体，并快速恢复大肠杆菌中插入位点两侧的序列。
2. DEVELOPMENT AND CLINICAL VALIDATION OF LOOP-MEDIATED ISOTHERMAL AMPLIFICATION METHOD FOR RAPID DETECTION OF BORDETELLA PERTUSSIS BASED ON INSERTION SEQUENCE IS481 [J] . Torkaman Mohammad Reza Allahyar, Nikbin Vajihe Sadat, Lotfi Masoumeh Nakhost, Iranian journal of public health. . 2014,第2Suppla期

机译：基于插入序列IS481的快速检测百日咳博德特氏菌的环介导的等温扩增方法的开发及临床验证
3. panISa: ab initio detection of insertion sequences in bacterial genomes from short read sequence data [J] . Treepong Panisa, Guyeux Christophe, Meunier Alexandre, Bioinformatics . 2018,第22期

机译：Panisa：AB Initio从短读序列数据中检测细菌基因组中的插入序列
4. rCANID: read Clustering and Assembly-based Novel Insertion Detection tool [C] . Yilei Fu, Tao Jiang, Bo Liu, IEEE International Conference on Bioinformatics and Biomedicine . 2018

机译：rCANID：阅读基于聚类和程序集的新颖插入检测工具
5. Detection of Covert Communications based on Intentionally Corrupted Frame Check Sequences. [D] . Najafizadeh, Ali. 2011

机译：基于故意损坏的帧检查序列的秘密通信检测。
6. Identification of a Novel Calcium Binding Motif Based on the Detection of Sequence Insertions in the Animal Peroxidase Domain of Bacterial Proteins [O] . Saray Santamaría-Hernando, Tino Krell, María-Isabel Ramos-González 2009

机译：基于细菌细菌的动物过氧化物酶结构域中序列插入检测的新型钙结合基序的鉴定
7. Identification of a novel calcium binding motif based on the detection of sequence insertions in the animal peroxidase domain of bacterial proteins. [O] . Saray Santamaría-Hernando, Tino Krell, María-Isabel Ramos-González 2012

机译：基于检测细菌蛋白质的动物过氧化物酶结构域中的序列插入来鉴定新的钙结合基序。

Long-Read Based Novel Sequence Insertion Detection With rCANID

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