Exact Algorithms for Duplication-Transfer-Loss Reconciliation with Non-Binary Gene Trees

Misagh Kordi; Mukul S. Bansal

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Exact Algorithms for Duplication-Transfer-Loss Reconciliation with Non-Binary Gene Trees

机译：非二进制基因树的复制-转移-损失对账的精确算法

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摘要

Duplication-Transfer-Loss (DTL) reconciliation is a powerful method for studying gene family evolution in the presence of horizontal gene transfer. DTL reconciliation seeks to reconcile gene trees with species trees by postulating speciation, duplication,

机译：复制-转移-丢失（DTL）和解是研究存在水平基因转移时基因家族进化的有效方法。 DTL对帐旨在通过假设物种形成，复制，

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《IEEE/ACM transactions on computational biology and bioinformatics》 |2019年第4期|1077-1090|共14页
作者
Misagh Kordi; Mukul S. Bansal;
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作者单位

Department of Computer Science & Engineering University of Connecticut Storrs CT;

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正文语种 eng
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关键词
Vegetation; Uncertainty; Inference algorithms; Evolution (biology); Algorithm design and analysis; Computer science;

机译：植被;不确定;推理算法;进化（生物学）;算法设计与分析;计算机科学;

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专利

1. An efficient exact algorithm for computing all pairwise distances between reconciliations in the duplication-transfer-loss model [J] . Santi Santichaivekin, Ross Mawhorter, Ran Libeskind-Hadas BMC Bioinformatics . 2019,第S20期

机译：一种有效的精确算法，用于计算复制传输损失模型中的对帐之间的所有成对距离
2. On the impact of uncertain gene tree rooting on duplication-transfer-loss reconciliation [J] . Soumya Kundu, Mukul S. Bansal BMC Bioinformatics . 2018,第9期

机译：关于不确定的基因树生根对复制-转移-损失和解的影响
3. GATC: a genetic algorithm for gene tree construction under the Duplication-Transfer-Loss model of evolution [J] . Emmanuel Noutahi, Nadia El-Mabrouk BMC Genomics . 2018,第2期

机译：GATC：进化-复制-转移-损失模型下基因树构建的遗传算法
4. On the Complexity of Duplication-Transfer-Loss Reconciliation with Non-binary Gene Trees [C] . Misagh Kordi, Mukul S. Bansal . 2015

机译：非二进制基因树的复制-转移-损失协调的复杂性
5. From Gene Trees to Species Trees: Algorithms for Parsimonious Reconciliation [D] . Yu, Yun 2012

机译：从基因树到物种树：简约和解算法
6. An efficient exact algorithm for computing all pairwise distances between reconciliations in the duplication-transfer-loss model [O] . Santi Santichaivekin, Ross Mawhorter, Ran Libeskind-Hadas 2019

机译：一种有效的精确算法用于计算复制-传输-损失模型中对帐之间的所有成对距离
7. Exact Algorithms for Duplication-Transfer-Loss Reconciliation with Non-Binary Gene Trees [O] . Misagh Kordi, Mukul S. Bansal 2016

机译：用非二进制基因树进行重复传输损耗对帐的确切算法

Exact Algorithms for Duplication-Transfer-Loss Reconciliation with Non-Binary Gene Trees

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