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Bio-inspired benchmark generator for extracellular multi-unit recordings

机译:用于细胞外多单元录制的生物启发基准发生器

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The analysis of multi-unit extracellular recordings of brain activity has led to the development of numerous tools, ranging from signal processing algorithms to electronic devices and applications. Currently, the evaluation and optimisation of these tools are hampered by the lack of ground-truth databases of neural signals. These databases must be parameterisable, easy to generate and bio-inspired, i.e. containing features encountered in real electrophysiological recording sessions. Towards that end, this article introduces an original computational approach to create fully annotated and parameterised benchmark datasets, generated from the summation of three components: neural signals from compartmental models and recorded extracellular spikes, non-stationary slow oscillations, and a variety of different types of artefacts. We present three application examples. (1) We reproduced in-vivo extracellular hippocampal multi-unit recordings from either tetrode or polytrode designs. (2) We simulated recordings in two different experimental conditions: anaesthetised and awake subjects. (3) Last, we also conducted a series of simulations to study the impact of different level of artefacts on extracellular recordings and their influence in the frequency domain. Beyond the results presented here, such a benchmark dataset generator has many applications such as calibration, evaluation and development of both hardware and software architectures.
机译:对大脑活动的多单元细胞外记录的分析导致了许多工具的开发,从信号处理算法到电子设备和应用。目前,这些工具的评估和优化受到神经信号的缺乏实地真实数据库的阻碍。这些数据库必须是可变的,易于生成和生物启发,即在真正的电生理记录会话中遇到的功能。本文介绍了一种创建完全注释和参数化基准数据集的原始计算方法,从三个组件的求和产生:来自隔间模型的神经信号,并记录了细胞外尖峰,非静止缓慢振荡和各种不同类型人工制品。我们提出了三个应用示例。 (1)我们从四方或多电平设计中复制了体内细胞外海马多单元录音。 (2)我们在两种不同的实验条件下模拟录音:麻醉和清醒的主题。 (3)最后,我们还进行了一系列模拟,以研究不同级别的人工制品对细胞外记录的影响及其在频域中的影响。除此之外,这种基准数据集生成器具有许多应用,例如硬件和软件架构的校准,评估和开发。

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