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Bio-inspired benchmark generator for extracellular multi-unit recordings

机译:受生物启发的基准生成器用于细胞外多单位录音

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摘要

The analysis of multi-unit extracellular recordings of brain activity has led to the development of numerous tools, ranging from signal processing algorithms to electronic devices and applications. Currently, the evaluation and optimisation of these tools are hampered by the lack of ground-truth databases of neural signals. These databases must be parameterisable, easy to generate and bio-inspired, i.e. containing features encountered in real electrophysiological recording sessions. Towards that end, this article introduces an original computational approach to create fully annotated and parameterised benchmark datasets, generated from the summation of three components: neural signals from compartmental models and recorded extracellular spikes, non-stationary slow oscillations, and a variety of different types of artefacts. We present three application examples. (1) We reproduced in-vivo extracellular hippocampal multi-unit recordings from either tetrode or polytrode designs. (2) We simulated recordings in two different experimental conditions: anaesthetised and awake subjects. (3) Last, we also conducted a series of simulations to study the impact of different level of artefacts on extracellular recordings and their influence in the frequency domain. Beyond the results presented here, such a benchmark dataset generator has many applications such as calibration, evaluation and development of both hardware and software architectures.
机译:对大脑活动的多单元细胞外记录的分析已导致开发了许多工具,从信号处理算法到电子设备和应用程序。当前,由于缺乏神经信号的真实数据库,这些工具的评估和优化受到阻碍。这些数据库必须是可参数化的,易于生成的并且具有生物启发性,即包含在实际电生理记录过程中遇到的功能。为此,本文引入了一种原始的计算方法来创建完全注释和参数化的基准数据集,该数据集由以下三个部分的总和产生:来自隔室模型和记录的细胞外尖峰的神经信号,非平稳慢振荡以及多种不同类型人工制品。我们提供了三个应用示例。 (1)我们从四极体或多极体设计中复制了体内细胞外海马多单位录音。 (2)我们模拟了两种不同实验条件下的录音:麻醉和清醒的受试者。 (3)最后,我们还进行了一系列模拟,以研究不同水平的人工制品对细胞外记录的影响及其在频域中的影响。除了此处提供的结果外,这样的基准数据集生成器还具有许多应用程序,例如硬件,软件体系结构的校准,评估和开发。

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