...
首页> 外文期刊>PLoS Computational Biology >Bioinformatics analysis of whole slide images reveals significant neighborhood preferences of tumor cells in Hodgkin lymphoma
【24h】

Bioinformatics analysis of whole slide images reveals significant neighborhood preferences of tumor cells in Hodgkin lymphoma

机译:整个幻灯片图像的生物信息学分析揭示了霍奇金淋巴瘤肿瘤细胞的显着邻域偏好

获取原文
           

摘要

In pathology, histological diagnosis is still challenging, in particular, for tumor diseases. Pathologists diagnose the disease and its stage of development on the basis of evaluation and interpretation of images of tissue sections. The quantification of experimental data to support decisions of diagnosis and prognosis, applying bioinformatics methods, is an important issue. Here, we introduce a new, general approach to analyze tissue images of tumor and non-tumor patients and to evaluate the distribution of tumor cells in the tissue. Moreover, we consider neighborhood relations between immunostained cells of different cell morphology. We focus on a special type of lymph node tumor, the Hodgkin lymphoma, exploring the two main types of the classical Hodgkin lymphoma, the nodular sclerosis and the mixed cellularity, and the non-tumor case, the lymphadenitis, representing an inflammation of the lymph node. We considered more than 400, 000 cells immunohistochemically stained with CD30 in 35 whole slide images of tissue sections. We found that cells of specific morphology exhibited significant relations to cells of certain morphology as spatial nearest neighbor. We could show different neighborhood patterns of CD30-positive cells between tumor and non-tumor. The approach is general and can easily be applied to other tumor types.
机译:在病理学中,组织学诊断仍然挑战肿瘤疾病。病理学家在基于组织切片图像的评估和解释的基础上诊断疾病及其发展阶段。实验数据的量化,以支持诊断和预后的决策,应用生物信息学方法是一个重要问题。在这里,我们介绍一种新的一般方法来分析肿瘤和非肿瘤患者的组织图像,并评估组织中肿瘤细胞的分布。此外,我们考虑不同细胞形态的免疫细胞之间的邻居关系。我们专注于一种特殊类型的淋巴结肿瘤,霍奇金淋巴瘤,探索了两种主要类型的典型霍奇金淋巴瘤,结节硬化症和混合细胞,以及非肿瘤案例,淋巴腺炎,代表淋巴炎节点。我们认为超过400,000个细胞免疫组织化学染色,在35个组织切片的整个幻灯片图像中用CD30染色。我们发现特定形态的细胞表现出与某些形态的细胞与空间最近邻居的细胞有显着关系。我们可以在肿瘤和非肿瘤之间显示CD30阳性细胞的不同邻域模式。该方法是一般的,可以很容易地应用于其他肿瘤类型。

著录项

相似文献

  • 外文文献
  • 中文文献
  • 专利
获取原文

客服邮箱:kefu@zhangqiaokeyan.com

京公网安备:11010802029741号 ICP备案号:京ICP备15016152号-6 六维联合信息科技 (北京) 有限公司©版权所有
  • 客服微信

  • 服务号