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Fatty acid composition of developing tree peony ( Paeonia section Moutan DC.) seeds and transcriptome analysis during seed development

机译:发育中牡丹(牡丹区牡丹皮)种子脂肪酸组成及种子发育过程中的转录组分析

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Tree peony (Paeonia section Moutan DC.) is known for its excellent ornamental and medicinal values. In 2011, seeds from P. ostii have been identified as novel resource of α-linolenic acid (ALA) for seed oil production and development in China. However, the molecular mechanism on biosynthesis of unsaturated fatty acids in tree peony seeds remains unknown. Therefore, transcriptome data is needed to better understand the underlying mechanisms. In this study, lipid accumulation contents were measured using GC-MS methods across developing tree peony seeds, which exhibited an extraordinary ALA content (49.3%) in P. ostii mature seeds. Transcriptome analysis was performed using Illumina sequencing platform. A total of 144 million 100-bp paired-end reads were generated from six libraries, which identified 175,874 contigs. In the KEGG Orthology enrichment of differentially expressed genes, lipid metabolism pathways were highly represented categories. Using this data we identified 388 unigenes that may be involved in de novo fatty acid and triacylglycerol biosynthesis. In particular, three unigenes (SAD, FAD2 and FAD8) encoding fatty acid desaturase with high expression levels in the fast oil accumulation stage compared with the initial stage of seed development were identified. This study provides the first comprehensive genomic resources characterizing tree peony seeds gene expression at the transcriptional level. These data lay the foundation for further understanding of molecular mechanism responsible for lipid biosynthesis and the high unsaturated fatty acids (especially ALA) accumulation. Meanwhile, it provides theoretical base for potential oilseed application in the respect of n-6 to n-3 ratio for human diets and future regulation of target healthy components of oils.
机译:牡丹(Pa药节,牡丹山,DC)以其极好的观赏和药用价值而闻名。在2011年,来自体育假单胞菌的种子被鉴定为α-亚麻酸(ALA)的新资源,用于中国种子油的生产和开发。然而,牡丹种子中不饱和脂肪酸生物合成的分子机制仍然未知。因此,需要转录组数据来更好地了解其潜在机制。在这项研究中,使用GC-MS方法测量了发育中的牡丹种子的脂质积累量,在牡丹成熟种子中显示出非同寻常的ALA含量(49.3%)。使用Illumina测序平台进行转录组分析。从六个文库中生成了总计1.44亿个100 bp的配对末端读段,其中鉴定了175,874个重叠群。在KEGG Orthology差异表达基因的富集中,脂质代谢途径被高度代表。利用这些数据,我们确定了388个可能与从头脂肪酸和三酰甘油生物合成有关的单基因。特别是,鉴定了三个编码脂肪酸去饱和酶的单基因(SAD,FAD2和FAD8),与种子发育的初始阶段相比,其在快速积油阶段具有高表达水平。这项研究提供了第一个全面的基因组资源,在转录水平上表征了牡丹种子基因的表达。这些数据为进一步了解负责脂质生物合成和高不饱和脂肪酸(尤其是ALA)积累的分子机制奠定了基础。同时,它为人类饮食中n-6与n-3的比例以及未来对目标油类健康成分的调节提供了潜在油料种子应用的理论基础。

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