Author summary Pattern separation (the process of disambiguating incoming patterns of neuronal activity) is a central concept in all current theories of episodic memory, as it is hypothesized to support our ability to avoid confusion between similar memories. For the last thirty years, pattern separation has been attributed to the dentate gyrus of the hippocampus, but this has been hard to test experimentally. Moreover, because it is unclear how to define activity patterns in the brain, such a computation could be achieved in many different ways. Here, we demonstrate that pattern separation is performed by hippocampal networks (dentate gyrus and CA3) through a variety of neural codes. By systematically testing different definitions of what it means for spike trains to be similar (using a range of time scales and both standard and innovative metrics that assume different views of the neural code), we assessed how the input-output transformation of multiple hippocampal celltypes relate to pattern separation and found that different celltypes favor complementary coding strategies. This might help storing rich but concise and unambiguous representations of complex events. Finally, we provide the first experimental evidence of the importance of inhibitory signals in mediating pattern separation, and identify through which coding strategies.
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