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Eigensolver performance comparison on Cray XC systems

机译:Cray XC系统上的Eigensolver性能比较

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摘要

Hermitian (symmetric) eigenvalue solvers are the core constituents of electronic structure,quantum-chemistry, and other HPC applications such as Quantum ESPRESSO, VASP, CP2K,and NWChem to name a few. Our understanding of the performance of symmetric eigenvaluealgorithms on various hardware is clearly important to the quantum chemistry or condensed matterphysics community but in fact goes beyond that community. For instance, big data analyticsis increasingly utilizing eigenvalues solvers, in the study of randomized singular value decomposition(SVD) or principal component analysis (PCA). Noise, vibration, and harshness (NVH) isanother field where fast and efficient eigenvalue solvers are required. Most eigenvalue solverpackages feature numerous different parameters which can be tuned for performance, eg, thenumber of nodes, number of total ranks, the decomposition of the matrix, etc. In this paper, weinvestigate the performance of different packages as well as the influence of these knobs on thesolver performance.
机译:埃尔米特(对称)特征值求解器是电子结构,量子化学和其他HPC应用程序(例如Quantum ESPRESSO,VASP,CP2K, r n和NWChem)的核心组成部分。我们对对称特征值 r 算法在各种硬件上的性能的理解对于量子化学或凝聚态 r n物理学界来说显然很重要,但实际上超出了该领域。例如,在随机奇异值分解 r n(SVD)或主成分分析(PCA)的研究中,大数据分析 r nis越来越多地使用特征值求解器。噪声,振动和粗糙度(NVH)是另一个需要快速而有效的特征值求解器的领域。大多数特征值求解器 r n程序包都具有许多可以针对性能进行调整的参数,例如, r n节点数,总秩数,矩阵分解等。在本文中,我们 r n进行调查不同程序包的性能以及这些旋钮对 r nsolver性能的影响。

著录项

  • 来源
    《Concurrency, practice and experience》 |2019年第16期|e4997.1-e4997.17|共17页
  • 作者单位

    National Energy Research ScientificComputing Center, Lawrence BerkeleyNational Laboratory, California;

    National Energy Research ScientificComputing Center, Lawrence BerkeleyNational Laboratory, California;

    National Energy Research ScientificComputing Center, Lawrence BerkeleyNational Laboratory, California;

    Cray Programming EnvironmentsPerformance Engineering, Cray Inc, Minnesota;

    Cray Programming EnvironmentsPerformance Engineering, Cray Inc, Minnesota;

    Cray Programming EnvironmentsPerformance Engineering, Cray Inc, Minnesota;

  • 收录信息
  • 原文格式 PDF
  • 正文语种 eng
  • 中图分类
  • 关键词

    cray; eigensolver; ELPA; performance; scalapack;

    机译:克拉;eigensolver;呼吸;表现;缩钢;

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