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DNA knotting in spooling like conformations in bacteriophages

机译:DNA像噬菌体中的构象一样绕线轴打结

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摘要

A number of idealized models have been proposed to explain the long range organization of the DNA in bacteriophages. However, none of these models can account for the distributions of complex knots found when examining DNA extracted from bacteriophage P4 capsids. Furthermore, these models do not consider possible chirality biases in the arrangement of the DNA molecule inside the capsid. In this paper, we address these two issues by proposing a randomized version of one of the most popular models: the coaxially spooled model. We present analytical and numerical results for the properties of the random polygons (knots) generated using this model. We show that such model can easily generate complex knotted conformations and although it accounts for some chirality of the organization of the DNA molecules inside bacteriophage capsids does not fully explain the experimental data.
机译:已经提出了许多理想的模型来解释DNA在噬菌体中的长距离组织。但是,这些模型都无法解释检查从噬菌体P4衣壳中提取的DNA时发现的复杂结的分布。此外,这些模型没有考虑衣壳内部DNA分子排列中可能存在的手征性偏差。在本文中,我们通过提出一种最流行的模型的随机版本来解决这两个问题:同轴假脱机模型。我们提供使用此模型生成的随机多边形(结)的属性的分析和数值结果。我们表明,这种模型可以很容易地产生复杂的打结的构象,尽管它说明了噬菌体衣壳内部的DNA分子组织的某些手性不能完全解释实验数据。

著录项

  • 来源
  • 作者

    J. Arsuaga; Y. Diao -;

  • 作者单位

    Department of Mathematics, San Francisco State University, San Francisco, CA, USA;

    Department of Mathematics and Statistics, University of North Carolina at Charlotte, Charlotte, NC, USA;

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  • 原文格式 PDF
  • 正文语种 eng
  • 中图分类
  • 关键词

    57M25; 92Bxx;

    机译:猪肉塞贝克斯;

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