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The VGN Proteomics Module: A Transferable Laboratory Module for Undergraduates

机译:VGN蛋白质组学模块:适用于大学生的可转移实验室模块

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摘要

The Vermont Genetics Network (VGN) Outreach Core's mission is to bring cutting-edge technology and knowledge to undergraduates at colleges throughout the state of Vermont. The VGN Proteomics Outreach project initiated in the fall of 2009 exposes undergraduates in the state of Vermont to proteomics technology using hands on laboratory experiences. We provide all teaching materials, laboratory materials and if necessary equipment for colleges within the state to run the module. All materials become the property of the recipient institution upon completion of the laboratory module. The undergraduate students learn about this cutting edge technology and gain new skills that we believe will help them with their future scientific careers. In this transferable module, students learn how protein expression in yeast is changed after exposure to oxidative stress or an environmental toxin. Total protein is then harvested and prepared for 2D gel analysis. Proteins with differential expression are isolated from the 2D gel and prepared for Mass Spectrometry at the UVM Proteomics Core Facility. The data is processed and students examine their results and use bioinformatics tools to further understand the biological implications of the results. The students than present their findings, describe specific proteins that showed differential expression. A hypothesis is presented explaining the biological relevance of the protein expression change along with a plan for testing this hypothesis. This work was sponsored by Grant Number P20 RR16462, from the IDeA Networks of Biomedical Research Excellence (INBRE) Program of the National Center for Research Resources (NCRR), a component of the National Institutes of Health (NIH).
机译:佛蒙特州遗传学网络(VGN)外展核心的任务是为佛蒙特州全州的大学本科生提供最先进的技术和知识。 VGN蛋白质组学外展项目于2009年秋季启动,通过动手实验室经验,使佛蒙特州的大学生接触到蛋白质组学技术。我们为州内的大学提供所有的教学材料,实验室材料以及必要的设备,以运行该模块。完成实验室模块后,所有材料将成为接收方机构的财产。本科生将学习这一尖端技术并获得新技能,我们相信这些新技能将对他们未来的科学职业有所帮助。在该可转移模块中,学生将学习暴露于氧化应激或环境毒素后酵母中蛋白质表达的变化。然后收获总蛋白,并准备进行二维凝胶分析。从2D凝胶中分离出具有差异表达的蛋白质,并在UVM蛋白质组学核心实验室进行质谱分析。数据经过处理,学生检查其结果并使用生物信息学工具进一步了解结果的生物学含义。然后,学生展示他们的发现,描述表现出差异表达的特定蛋白质。提出了一个假设,解释了蛋白质表达变化的生物学相关性以及用于测试该假设的计划。这项工作是由美国国立卫生研究院(NIH)的国家研究资源中心(NCRR)的IDeA生物医学研究卓越网络(INBRE)计划的P20 RR16462资助的。

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