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Automatic segmentation of brain tumor resections in intraoperative ultrasound images using U-Net

机译:使用U-NET在术中超声图像中脑肿瘤切除的自动分割

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摘要

To compensate for the intraoperative brain tissue deformation, computer-assisted intervention methods have been used to register preoperative magnetic resonance images with intraoperative images. In order to model the deformation due to tissue resection, the resection cavity needs to be segmented in intraoperative images. We present an automatic method to segment the resection cavity in intraoperative ultrasound (iUS) images. We trained and evaluated two-dimensional (2-D) and three-dimensional (3-D) U-Net networks on two datasets of 37 and 13 cases that contain images acquired from different ultrasound systems. The best overall performing method was the 3-D network, which resulted in a 0.72 mean and 0.88 median Dice score over the whole dataset. The 2-D network also had good results with less computation time, with a median Dice score over 0.8. We also evaluated the sensitivity of network performance to training and testing with images from different ultrasound systems and image field of view. In this application, we found specialized networks to be more accurate for processing similar images than a general network trained with all the data. Overall, promising results were obtained for both datasets using specialized networks. This motivates further studies with additional clinical data, to enable training and validation of a clinically viable deep-learning model for automated delineation of the tumor resection cavity in iUS images.
机译:为了补偿术中脑组织变形,已经使用计算机辅助干预方法与术目不然图像登记术前磁共振图像。为了模拟组织切除引起的变形,需要在术中图像中进行切除腔。我们提出了一种自动方法来在术中超声(IUS)图像中分割切除腔。我们在37和13个案例的两个数据集上培训和评估了二维(2-D)和三维(3-D)U-Net网络,该数据集包含从不同超声系统获取的图像。最好的总体执行方法是三维网络,导致整个数据集的0.72平均值和0.88个中位数分数。 2-D网络也具有较好的效果,计算时间较少,中位数骰子得分超过0.8。我们还评估了网络性能与来自不同超声系统和图像视野的图像的训练和测试的敏感性。在本申请中,我们发现专门的网络更准确地处理与所有数据训练的一般网络相似的图像。总体而言,使用专业网络的两个数据集获得了有希望的结果。这激发了具有额外临床数据的进一步研究,以实现培训和验证IUS图像中肿瘤切除腔的自动描绘的临床可行深度学习模型。

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