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Nanofluidic Devices with 8 Pores in Series for Real-Time Resistive-Pulse Analysis of Hepatitis B Virus Capsid Assembly

机译:具有串联的8个孔的纳米流体设备用于乙肝病毒衣壳组件的实时抗性脉冲分析

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摘要

To improve the precision of resistive-pulse measurements, we have used a focused ion beam instrument to mill nanofluidic devices with 2, 4, and 8 pores in series and compared their performance. The in-plane design facilitates the fabrication of multiple pores in series, which, in turn, permits averaging of the series of pulses generated from each translocation event. The standard deviations (σ) of the pulse amplitude distributions decrease by 2.7-fold when the average amplitudes of eight pulses are compared to the amplitudes of single pulses. Similarly, standard deviations of the pore-to-pore time distributions decrease by 3.2-fold when the averages of the seven measurements from 8-pore devices are contrasted to single measurements from 2-pore devices. With signal averaging, the inherent uncertainty in the measurements decreases; consequently, the resolution (mean/σ) improves by a factor equal to the square root of the number of measurements. We took advantage of the improved size resolution of the 8-pore devices to analyze in real time the assembly of Hepatitis B Virus (HBV) capsids below the pseudo-critical concentration. We observe that abundances of assembly intermediates change over time. During the first hour of the reaction, the abundance of smaller intermediates decreased, whereas the abundance of larger intermediates with sizes closer to a T = 4 capsid remained constant.
机译:为了提高电阻脉冲测量的精度,我们使用了聚焦离子束仪来研磨具有2个,4个和8个孔的纳米流体装置,并比较了它们的性能。平面内设计有利于串联的多个孔的制造,进而允许对从每个移位事件产生的一系列脉冲进行平均。当将八个脉冲的平均幅度与单个脉冲的幅度进行比较时,脉冲幅度分布的标准偏差(σ)减小2.7倍。同样,当将8孔装置的7个测量值的平均值与2孔装置的单个测量值进行对比时,孔至孔时间分布的标准偏差减小了3.2倍。通过信号平均,测量中的固有不确定性降低;因此,分辨率(mean /σ)的提高幅度等于测量次数的平方根。我们利用8孔设备尺寸分辨率的提高,实时分析了伪临界浓度以下的乙型肝炎病毒(HBV)衣壳的装配情况。我们观察到大量的组装中间体会随着时间而变化。在反应的第一小时内,较小中间体的丰度降低,而尺寸更接近T = 4衣壳的较大中间体的丰度保持恒定。

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