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Canine histiocytic diseases: Unraveling the mechanisms of tumorigenesis.

机译:犬组织细胞疾病:阐明肿瘤发生的机制。

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摘要

Dog breeds provide unique genetic pools for studying rare disorders that affect both dogs and humans. Understanding the prevalence of these disorders is a key first step in addressing breed-associated diseases and establishing the utility of the dog as a spontaneous model of human disease. Analysis of the community-based assessment of health status of Bernese mountain dogs (BMD) was conducted utilizing an open-access database, the Berner-Garde Database. The Berner-Garde Database was accessed on March 1, 2013 and outputted to SQL, a database management system, for querying. Complete entries that included sex, age, and diagnosis were chosen, resulting in 7,262 individual dogs for analysis. Nearly 86% of these dogs died by ten years of age. Over 44% of diagnoses were categorized as cancer; the most prevalent cancer was histiocytic sarcoma, which comprised 37% of the cancer diagnoses, while lymphoma was the second highest cancer diagnosis at 20%. During the last twenty years cancer has surpassed dysplasias as the most important diagnosis for BMDs. The prevalence of histiocytic sarcoma diagnoses has grown, which may be partially due to improved diagnostic criteria. At the same time, the median age at death for BMDs with histiocytic sarcoma has not improved, but in fact, has decreased over the last decade. Despite improvement in diagnosis of histiocytic sarcoma, improvements in treatment of this disease have not followed.;Histiocytic diseases encompass a spectrum of proliferative diseases in dogs and humans. Human histiocytic diseases are rare diseases that affect children and adults, but in BMDs, these diseases are common. Canine histiocytic diseases range from benign histiocytoma to malignant histiocytic sarcoma (HS), which in the disseminated form has a poor prognosis and does not respond well to chemotherapeutics. The goal of this work is to unravel the mechanisms of tumorigenesis in canine histiocytic diseases by probing the differential expression of microRNAs (miRNA) along the spectrum of canine histiocytic diseases. As regulators of gene expression, miRNAs will provide insight into the pathways for tumorigenesis in histiocytic malignancies as compared to benign histiocytic diseases. MiRNA profiling of canine histiocytic diseases was conducted on cases of reactive histiocytosis, histiocytic sarcoma, and hemophagocytic histiocytic sarcoma. These samples were compared to normal canine histiocytes derived from peripheral blood and peritoneal fluid. Analysis of the profiling data yielded several miRNAs, which were selected for validation by quantitative reverse transcription PCR (qRT-PCR). Data analysis with unsupervised clustering revealed sets of miRNAs that were overexpressed in BMDs or mixed breed dogs. Validation by qRT-PCR showed significant upregulation of miR-125b and miR-152 in dogs affected with a histiocytic disease. MiRNAs that are critical for tumorigenesis represent targets for manipulation to increase our understanding of these malignancies and discover novel and effective therapies.;As part of a concurrent approach to understanding histiocytic disease, the whole genome of a female spayed BMD with histiocytic sarcoma was sequenced using three genomic DNA samples. The first was a blood sample taken from this dog when she was 4 years of age, prior to diagnosis with histiocytic sarcoma. The second was a sample of a mediastinal tumor mass and the third sample was a cell line derived from an affected abdominal lymph node; both of these samples were taken at necropsy. There were 29 spontaneous nonsynonymous mutations in the tumor that were predicted to be deleterious and four of these variants were in genes associated with cancer including SSH3,ITGB7, and FANCM. Six mutations potentially represented loss of heterozygosity including FAT1, MTUS1, and LRP1B, which are associated with cancer. Over one hundred variants were considered germ line mutations, the majority of which were heterozygous in all the samples and fifty-one were homozygous in all three samples. Using these data, future work will involve evaluating the genes in independent affected and unaffected BMDs to validate the variants as potential driver mutations of histiocytic sarcoma tumorigenesis.
机译:狗的品种为研究影响狗和人的罕见疾病提供了独特的遗传库。了解这些疾病的患病率是解决与品种有关的疾病并确立狗作为人类疾病自发模型的关键性的第一步。利用开放式数据库Berner-Garde数据库,对基于社区的伯恩山地犬(BMD)健康状况评估进行了分析。 2013年3月1日访问了Berner-Garde数据库,并将其输出到数据库管理系统SQL进行查询。选择包括性别,年龄和诊断的完整条目,结果产生了7,262条单独的狗用于分析。这些狗中近86%的人在10岁时死亡。超过44%的诊断被归类为癌症;最普遍的癌症是组织细胞肉瘤,占癌症诊断的37%,而淋巴瘤是第二高的癌症诊断,占20%。在过去的二十年中,癌症已超过发育异常,成为BMD的最重要诊断。组织细胞肉瘤的诊断患病率上升,这可能部分是由于诊断标准的提高。同时,患有组织细胞肉瘤的BMD的中位死亡年龄没有改善,但实际上在最近十年中有所下降。尽管组织细胞肉瘤的诊断有所改善,但仍未跟随该疾病的治疗方法的改善。组织细胞性疾病包括犬和人的一系列增生性疾病。人类组织细胞疾病是影响儿童和成人的罕见疾病,但在BMD中,这些疾病很常见。犬组织细胞疾病的范围从良性组织细胞瘤到恶性组织细胞肉瘤(HS),它们的传播形式预后较差,对化学疗法的反应也不佳。这项工作的目的是通过探查犬组织细胞疾病沿谱线的微小RNA(miRNA)的差异表达,揭示犬组织细胞疾病中的肿瘤发生机制。作为基因表达的调节剂,与良性组织细胞疾病相比,miRNA将提供对组织细胞恶性肿瘤中肿瘤发生途径的见解。对反应性组织细胞病,组织细胞肉瘤和吞噬细胞组织细胞肉瘤的病例进行了犬组织细胞疾病的miRNA分析。将这些样品与源自外周血和腹膜液的正常犬组织细胞进行比较。分析分析数据产生了几种miRNA,这些miRNA被选择用于定量逆转录PCR(qRT-PCR)的验证。无监督聚类的数据分析揭示了在BMD或混种狗中过表达的miRNA集。通过qRT-PCR进行的验证显示,在患有组织细胞病的犬中,miR-125b和miR-152明显上调。对肿瘤发生至关重要的miRNA代表了操纵的靶标,可增强我们对这些恶性肿瘤的了解并发现新颖有效的疗法。作为了解组织细胞病的一种并发方法的一部分,对使用遗传方法对雌性裸露的BMD的组织细胞肉瘤进行了全基因组测序三个基因组DNA样本。首先是在诊断出组织细胞肉瘤之前,从这只狗4岁时取的血样。第二个样品是纵隔肿瘤块的样品,第三个样品是来源于患腹淋巴结的细胞系。这两个样品都是在尸检时采集的。肿瘤中有29个自发的非同义突变,被预测为有害的,这些变异中的4个是与癌症相关的基因,包括SSH3,ITGB7和FANCM。六个突变可能代表杂合性的丧失,包括与癌症相关的FAT1,MTUS1和LRP1B。一百多个变体被认为是种系突变,其中大多数在所有样品中都是杂合的,而五十一个在所有三个样品中都是纯合的。利用这些数据,未来的工作将涉及评估独立的受影响和未受影响的BMD中的基因,以验证变异体是否为组织细胞肉瘤肿瘤发生的潜在驱动基因突变。

著录项

  • 作者

    Gregory-Bryson, Emmalena.;

  • 作者单位

    Michigan State University.;

  • 授予单位 Michigan State University.;
  • 学科 Veterinary science.;Molecular biology.;Genetics.
  • 学位 Ph.D.
  • 年度 2014
  • 页码 116 p.
  • 总页数 116
  • 原文格式 PDF
  • 正文语种 eng
  • 中图分类
  • 关键词

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