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Physiological and bioinformatic studies on polarity development in Ceratopteris richardii spores.

机译:rich藜孢子孢子极性发育的生理和生物信息学研究。

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摘要

Spores of the fern Ceratopteris richardii exhibit gravity directed polarity development. Previous research has indicated that a polar, bottom-to-top, calcium flux is present during the period of axis alignment and polarity fixation, and that this calcium current reorients within five to ten minutes of reorientation of the spore. We measured the ability of the current to reorient as quickly as 42 seconds after reorientation and found that the bottom-to-top calcium flux had already reoriented within that timeframe. This timeframe places restrictions on the molecular mechanisms of current reorientation, favoring a localized activation model, in which the current components are uniformly distributed in or near the plasma membrane of the spore, and are locally activated in response to the gravity signal. We also examined gene expression during polarity development by sequencing randomly selected clones from a spore cDNA library as expressed sequence tags (ESTs). Analysis of over 5,000 ESTs yielded 3,930 tentative unique genes (TUGS) expressed during spore germination. The identified TUGs represent approximately 25% of the expected total TUG population at this timepoint, indicating that EST sampling is far from complete. Analysis of the EST library also indicated expression of a number of dessication and dormancy related genes specifically expressed in Arabidopsis seeds. Additionally, the EST library was used to identify and clone three calcium signaling related genes, verifying the library as a useful approach to identify genes expressed during spore polarity development in Ceratopteris. Finally, a direct method for induction of RNA Interference (RNAi), the simple addition of dsRNA to the germination medium, was tested. This method has previously proven useful in other fern spore systems, but failed to induce gene silencing in Ceratopteris. Initial and apparently successful results using the approach were subsequently shown to be an artifact of the carryover of exogenous dsRNA into the RNA isolated for reverse transcription PCR assessment of gene expression. These studies have added to our resources for Ceratopteris research and have advanced our understanding of a single celled system in which the alignment of its polar axis is governed by a pervasive external signal, gravity.
机译:蕨类蕨类动物的孢子表现出重力定向的极性发展。先前的研究表明,在轴对齐和极性固定期间,存在从底部到顶部的极性钙流,并且该钙电流会在孢子重新定向后的五到十分钟内重新定向。我们测量了电流重新定向后最快42秒的重新定向能力,发现从底部到顶部的钙流在该时间范围内已经重新定向。该时间框架对电流重新定向的分子机制施加了限制,有利于局部激活模型,在该模型中,电流成分均匀地分布在孢子的质膜中或附近,并响应重力信号而被局部激活。我们还通过测序从孢子cDNA文库中随机选择的克隆作为表达的序列标签(EST),对极性发展过程中的基因表达进行了检查。对超过5,000个EST的分析产生了3,930个在孢子萌发过程中表达的暂定独特基因(TUGS)。在此时间点,已识别的TUG约占预期TUG总数的25%,表明EST采样还远远没有完成。 EST文库的分析还表明了在拟南芥种子中特异性表达的许多干燥和休眠相关基因的表达。此外,EST文库用于鉴定和克隆三个与钙信号相关的基因,证明该文库是鉴定在翅翅目孢子极性发育过程中表达的基因的有用方法。最后,测试了一种直接诱导RNA干扰(RNAi)的方法,即向发芽培养基中简单添加dsRNA。先前已证明该方法在其他蕨类孢子系统中有用,但未能在翅足类动物中诱导基因沉默。随后证明使用该方法的最初结果和显然成功的结果是外源dsRNA残留到分离的RNA中的假象,用于基因表达的逆转录PCR评估。这些研究增加了我们对角翅足类动物研究的资源,并加深了我们对单细胞系统的理解,在该系统中,其极轴的对准由普遍存在的外部信号重力控制。

著录项

  • 作者

    Stout, Stephen Charles.;

  • 作者单位

    The University of Texas at Austin.;

  • 授予单位 The University of Texas at Austin.;
  • 学科 Biology Plant Physiology.; Biology Molecular.; Biology Cell.
  • 学位 Ph.D.
  • 年度 2004
  • 页码 120 p.
  • 总页数 120
  • 原文格式 PDF
  • 正文语种 eng
  • 中图分类 植物学;分子遗传学;细胞生物学;
  • 关键词

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