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Characterization of a Bacillus cereus strain and identification of its cellulolytic activity.

机译:蜡状芽孢杆菌菌株的表征和其纤维素分解活性的鉴定。

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摘要

A Bacillus cereus strain was confirmed to have cellulolytic activities on a cellulose substrate. The genome structure, the secreted proteomes from the bacteria and the biochemical activities in degrading cellulosic materials were analyzed. The whole genome was sequenced using next generation sequencing, and contigs were assembled using the Velvet program. The assembled DNA contigs were translated into proteins, and 3,500 proteins were predicted. By searching functional domains in NCBI database, interesting proteins were identified which include cell wall hydrolase, 6-phospho-beta-glucosidase, and xylose isomerase, and many others. For extracellular protein identification, bacteria were cultured in a M9 minimum broth supplemented with carboxymethyl cellulose sodium salt (CMC). Proteins secreted into the broth were purified and then separated on SDS-PAGE gels, which were stained with Bio-Safe Coomassie G250 stain. Protein bands containing highly abundant proteins were isolated from the gel followed by in-gel-trypsin-digestion. Proteins contained in those bands were identified using nano-mass spectrometry analysis. Gram and endospore stains were used to identify the cell structure and endospore morphology. Based on protein and genomic DNA sequences, Gram and Endospore staining reaction, the bacterium was confirmed to belong to Bacillus cereus. For cellulolytic activity analysis, bacterial stock was inoculated in M9 mineral medium, supplemented with soluble CMC or microcrystalline cellulose respectively. Gel permeation chromatography was used to determine the molecular mass changes in filtered supernatant. Results showed that there was a continuous decrease of high molecular mass in soluble CMC media with extended treatment time, which was not shown in control samples. These results indicate that the bacteria were able to degrade soluble cellulose into smaller molecules. For the microcrystalline cellulose, it did not show apparent decrease in high molecular mass, further work is still undergoing.
机译:证实蜡样芽孢杆菌菌株在纤维素底物上具有纤维素分解活性。分析了基因组结构,细菌分泌的蛋白质组以及降解纤维素材料的生化活性。使用下一代测序对整个基因组进行测序,并使用Velvet程序组装重叠群。组装的DNA重叠群被翻译成蛋白质,并预测了3500种蛋白质。通过在NCBI数据库中搜索功能域,发现了有趣的蛋白质,包括细胞壁水解酶,6-磷酸-β-葡萄糖苷酶和木糖异构酶,以及许多其他蛋白质。为了鉴定细胞外蛋白质,将细菌在补充了羧甲基纤维素钠盐(CMC)的M9最低培养液中培养。纯化分泌到肉汤中的蛋白质,然后在SDS-PAGE凝胶上分离,并用Bio-Safe Coomassie G250染料染色。从凝胶中分离出含有高度丰富蛋白质的蛋白质条带,然后进行凝胶内胰蛋白酶消化。使用纳米质谱分析法鉴定了这些条带中包含的蛋白质。使用革兰氏菌和内生孢子染色来鉴定细胞结构和内生孢子形态。根据蛋白质和基因组DNA序列,革兰氏菌和内生孢子染色反应,证实该细菌属于蜡状芽孢杆菌。为了进行纤维素分解活性分析,将细菌原种接种在分别添加了可溶性CMC或微晶纤维素的M9矿物培养基中。凝胶渗透色谱法用于确定过滤的上清液中的分子量变化。结果表明,随着处理时间的延长,可溶性CMC介质中的高分子质量持续下降,而对照样品中未发现。这些结果表明细菌能够将可溶性纤维素降解成较小的分子。对于微晶纤维素,它没有显示出明显的高分子量下降,仍在进行进一步的工作。

著录项

  • 作者

    Li, Hui.;

  • 作者单位

    Tennessee State University.;

  • 授予单位 Tennessee State University.;
  • 学科 Engineering Agricultural.;Biology Microbiology.
  • 学位 M.S.
  • 年度 2013
  • 页码 53 p.
  • 总页数 53
  • 原文格式 PDF
  • 正文语种 eng
  • 中图分类
  • 关键词

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