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Apparatus and methods of using of biomarkers for predicting TNF-inhibitor response

机译:使用生物标志物预测TNF抑制剂反应的设备和方法

摘要

An apparatus (10) for using biomarkers for predicting one or more TNF-inhibitor responses in patients includes a measuring arrangement (such as a sequencer) (30) for processing one or more biological samples (20) to generate corresponding measurement data (40), a data processing arrangement (50) operable to obtain biological data derived from a plurality of samples from one or more databases (60), wherein the data processing arrangement (50) applies a leave out-one validation algorithm to the data from the plurality of samples to obtain probability indications for each sample related to response to the one or more biomarkers, wherein the data processing arrangement (50) is arranged to identify a subset of samples comprising biomarkers corresponding to a pre-determined regression threshold criterion (P) to obtain a preferred set of biomarkers, and wherein the data processing arrangement (50) is arranged to restrict the search space to known TNF-inhibitor predictors. The patients may be suffering from rheumatoid arthritis, inflammatory bowel disease, systemic lupus erythematosus or psoriasis, and the preferred set of biomarkers may comprise the protein ratio of sICAM1/CXCL13, the genotypes at loci rs12570744, rs2814707 and rs3849942 and the expression levels of CX3CR1 and CYP4F12.
机译:用于使用生物标志物预测患者中一种或多种TNF抑制剂反应的装置(10)包括用于处理一种或多种生物样品(20)以产生相应的测量数据(40)的测量装置(例如定序器)(30)。数据处理装置(50),其可操作以从一个或多个数据库(60)获得从多个样本中获得的生物数据,其中,所述数据处理装置(50)对所述多个数据中的数据应用留一检验算法样本的获取以获得与对一个或多个生物标记的响应有关的每个样本的概率指示,其中数据处理装置(50)被安排为识别包含对应于预定回归阈值标准(P)的生物标记的样本的子集。获得一组优选的生物标志物,并且其中将数据处理装置(50)布置成将搜索空间限制于已知的TNF抑制剂预测物。患者可能患有类风湿性关节炎,炎症性肠病,系统性红斑狼疮或牛皮癣,并且优选的生物标志物组可能包含sICAM1 / CXCL13的蛋白质比例,基因座rs12570744,rs2814707和rs3849942的基因型以及CX3CR1的表达水平和CYP4F12。

著录项

  • 公开/公告号GB2547406A

    专利类型

  • 公开/公告日2017-08-23

    原文格式PDF

  • 申请/专利权人 LASSE FOLKERSEN;

    申请/专利号GB20150020524

  • 发明设计人 LASSE FOLKERSEN;

    申请日2015-11-20

  • 分类号G06F19/18;C12Q1/68;G01N33/564;G01N33/68;G06F19/10;

  • 国家 GB

  • 入库时间 2022-08-21 13:20:33

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