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Creating an anthropomorphic digital MR phantom-an extensible tool for comparing and evaluating quantitative imaging algorithms

机译:创建一个拟人化的数字MR幻像-一种可扩展的工具,用于比较和评估定量成像算法

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摘要

Assessing and mitigating the various sources of bias and variance associated with image quantification algorithms is essential to the use of such algorithms in clinical research and practice. Assessment is usually accomplished with grid-based digital reference objects (DRO) or, more recently, digital anthropomorphic phantoms based on normal human anatomy. Publicly available digital anthropomorphic phantoms can provide a basis for generating realistic model-based DROs that incorporate the heterogeneity commonly found in pathology. Using a publicly available vascular input function (VIF) and digital anthropomorphic phantom of a normal human brain, a methodology was developed to generate a DRO based on the general kinetic model (GKM) that represented realistic and heterogeneously enhancing pathology. GKM parameters were estimated from a deidentified clinical dynamic contrast-enhanced (DCE) MRI exam. This clinical imaging volume was co-registered with a discrete tissue model, and model parameters estimated from clinical images were used to synthesize a DCE-MRI exam that consisted of normal brain tissues and a heterogeneously enhancing brain tumor. An example application of spatial smoothing was used to illustrate potential applications in assessing quantitative imaging algorithms. A voxel-wise Bland-Altman analysis demonstrated negligible differences between the parameters estimated with and without spatial smoothing (using a small radius Gaussian kernel). In this work, we reported an extensible methodology for generating model-based anthropomorphic DROs containing normal and pathological tissue that can be used to assess quantitative imaging algorithms.
机译:评估和减轻与图像量化算法相关的各种偏差和方差的来源对于在临床研究和实践中使用此类算法至关重要。通常使用基于网格的数字参考对象(DRO)或最近基于正常人体解剖学的数字拟人体模来完成评估。公众可获得的数字拟人化体模可以为生成基于模型的逼真的DRO提供基础,该DRO融合了病理学中常见的异质性。使用公众可用的血管输入功能(VIF)和正常人脑的数字拟人化体模,开发了一种方法,可基于代表实际和异质性增强病理的一般动力学模型(GKM)生成DRO。 GKM参数是根据不确定的临床动态对比增强(DCE)MRI检查估算的。该临床成像量与离散组织模型共配准,并且从临床图像估计的模型参数用于合成DCE-MRI检查,该检查由正常脑组织和异质性脑肿瘤组成。使用空间平滑的示例应用程序来说明在评估定量成像算法中的潜在应用程序。体素明智的Bland-Altman分析表明,使用和不使用空间平滑(使用小半径高斯核)估计的参数之间的差异可忽略不计。在这项工作中,我们报告了一种可扩展的方法,用于生成基于模型的拟人DRO,该模型包含正常和病理组织,可用于评估定量成像算法。

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