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Statistical tracking of tree-like tubular structures with efficient branching detection in 3D medical image data

机译:对3D医学图像数据进行有效分支检测的树状管状结构的统计跟踪

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摘要

The segmentation of tree-like tubular structures such as coronary arteries and airways is an essential step for many 3D medical imaging applications. Statistical tracking techniques for the extraction of elongated structures have received considerable attention in recent years due to their robustness against image noise and pathological changes. However, most tracking methods are limited to a specific application and do not support branching structures efficiently. In this work, we present a novel statistical tracking approach for the extraction of different types of tubular structures with ringlike cross-sections. Domain-specific knowledge is learned from training data sets and integrated into the tracking process by simple adaption of parameters. In addition, an efficient branching detection algorithm is presented. This approach was evaluated by extracting coronary arteries from 32 CTA data sets and distal airways from 20 CT scans. These data sets were provided by the organizers of the workshop '3D Segmentation in the Clinic: A Grand Challenge II-Coronary Artery Tracking (CAT08)' and 'Extraction of Airways from CT 2009 (EXACT09)'. On average, 81.5% overlap and 0.51 mm accuracy for the tracking of coronary arteries were achieved. For the extraction of airway tree's 51.3% of the total tree length, 53.6% of the total number of branches and a 4.98% false positive rate were attained. In both experiments, our approach si comparable to state-of-the-art methods.
机译:树状管状结构(例如冠状动脉和气道)的分割是许多3D医学成像应用程序中必不可少的步骤。近年来,用于提取细长结构的统计跟踪技术由于其对图像噪声和病理变化的鲁棒性而备受关注。但是,大多数跟踪方法仅限于特定的应用程序,并且不能有效地支持分支结构。在这项工作中,我们提出了一种新颖的统计跟踪方法,用于提取具有环形横截面的不同类型的管状结构。从训练数据集中学习特定领域的知识,并通过简单的参数调整将其集成到跟踪过程中。此外,提出了一种有效的分支检测算法。通过从32个CTA数据集中提取冠状动脉和从20个CT扫描中提取远端气道来评估这种方法。这些数据集由研讨会“临床中的3D分割:重大挑战II-冠状动脉追踪(CAT08)”和“从2009年CT提取气道(EXACT09)”的组织者提供。平均而言,实现了81.5%的重叠和0.51 mm的冠状动脉追踪精度。提取气管树的51.3%的树长,达到总枝数的53.6%和4.98%的假阳性率。在这两个实验中,我们的方法都可以与最新方法相媲美。

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